Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1857
(816 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64844-2|AAO25987.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.99
U64844-1|AAK72092.1| 882|Caenorhabditis elegans Hypothetical pr... 31 0.99
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr... 29 3.0
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ... 29 3.0
Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical pr... 28 7.0
AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1 ... 28 7.0
U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeas... 28 9.2
AC025723-13|AAK29939.1| 286|Caenorhabditis elegans Hypothetical... 28 9.2
AC024809-3|AAF59541.3| 455|Caenorhabditis elegans Hypothetical ... 28 9.2
>U64844-2|AAO25987.1| 846|Caenorhabditis elegans Hypothetical
protein T22F3.3b protein.
Length = 846
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 389 PFVNQVIDLLVGLRTGPESPDGTTDVADMYRVHFQIASPKEFHCF 255
P + Q+I+ + G PE PD D+++M R H + +F F
Sbjct: 738 PMLKQIIEQIEGGMFTPEDPDQLKDLSNMLRYHDRFMVCADFDAF 782
>U64844-1|AAK72092.1| 882|Caenorhabditis elegans Hypothetical
protein T22F3.3a protein.
Length = 882
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = -2
Query: 389 PFVNQVIDLLVGLRTGPESPDGTTDVADMYRVHFQIASPKEFHCF 255
P + Q+I+ + G PE PD D+++M R H + +F F
Sbjct: 774 PMLKQIIEQIEGGMFTPEDPDQLKDLSNMLRYHDRFMVCADFDAF 818
>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical protein
F59F3.1 protein.
Length = 1227
Score = 29.5 bits (63), Expect = 3.0
Identities = 23/84 (27%), Positives = 37/84 (44%)
Frame = +3
Query: 132 RAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNLQAFRETMKLLWTGDLKMNTVHVR 311
R G + H +K Y R +K DTP P+RW E K D+ + +
Sbjct: 1045 RIADFGLSKKHTNKTYY----RTKKSKDTPLPVRWMPLECIEEFKFTQKSDVWSFGICLY 1100
Query: 312 DVCRAIWTLGTSPQANKQIYNLVD 383
+ I+TLG +P N +N+++
Sbjct: 1101 E----IFTLGGTPYPNCDTFNVIE 1120
>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
protein F55A12.8 protein.
Length = 1043
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 578 EPSAGVELLLNKQLCLDGTKLRALMQLDVPKPTA-ELF 688
+P +E LN+ LCLD T + ++ P P A EL+
Sbjct: 464 KPGDKIEKWLNRLLCLDATNCQLKLECGTPPPAACELY 501
>Z73105-1|CAA97442.2| 525|Caenorhabditis elegans Hypothetical
protein R13.3 protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 741 KSSFGKELHRSIVF*NSLNSSAVGLGTSSCISARSLVPSRQSCLLRSSSTPALGSSGVCW 562
+ K+ HRS +F NS++ +++ S S +L + R SST LGS V
Sbjct: 434 RGRIAKKQHRSNMFQNSVSQASLHYFESQAPSEINLSTLEMTAPKRKSSTGKLGSMNVAE 493
Query: 561 REY 553
++
Sbjct: 494 EQH 496
>AY515708-1|AAR99658.1| 525|Caenorhabditis elegans bestrophin 1
protein.
Length = 525
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -1
Query: 741 KSSFGKELHRSIVF*NSLNSSAVGLGTSSCISARSLVPSRQSCLLRSSSTPALGSSGVCW 562
+ K+ HRS +F NS++ +++ S S +L + R SST LGS V
Sbjct: 434 RGRIAKKQHRSNMFQNSVSQASLHYFESQAPSEINLSTLEMTAPKRKSSTGKLGSMNVAE 493
Query: 561 REY 553
++
Sbjct: 494 EQH 496
>U13876-14|AAA21168.1| 2500|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 1 protein.
Length = 2500
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 333 TLGTSPQANKQIYNLVDEGNSTQGTLAELV 422
T G SP+ +IYN + GN T TL E+V
Sbjct: 218 TWGVSPEG-AEIYNQIARGNFTTQTLIEIV 246
>AC025723-13|AAK29939.1| 286|Caenorhabditis elegans Hypothetical
protein Y54F10AM.11 protein.
Length = 286
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 111 DEEQSGTRAEKHGGPELHHHKARYCVRNRRQKKFDTPSPLRWNLQAFRETMKL 269
D E +G + PEL R V RR +K P P + F ET++L
Sbjct: 221 DSEDTGAELVE---PELSRILQRTFVVPRRSRKLSVPEPEEYEEDGFSETLEL 270
>AC024809-3|AAF59541.3| 455|Caenorhabditis elegans Hypothetical
protein Y53G8AR.8 protein.
Length = 455
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -1
Query: 393 CSLR--QPSYRSACWPEDWSRESRWHDRRRGHV 301
C+ R + S +S W WSR RW + + HV
Sbjct: 6 CTARSFRTSVKSNGWVHKWSRFKRWQEMQAAHV 38
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,388,348
Number of Sequences: 27780
Number of extensions: 398373
Number of successful extensions: 1238
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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