Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1856
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 33 0.056
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 29 0.53
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 28 1.6
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ... 28 1.6
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 2.1
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 2.8
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.8
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma... 26 4.9
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein... 26 4.9
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 8.6
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 32.7 bits (71), Expect = 0.056
Identities = 27/93 (29%), Positives = 37/93 (39%)
Frame = +1
Query: 283 QDSQRSLNXGIARPSPGSTTLEDVLDSLLGLPSQPTRIPTPQPSPRKTSSPYYLTGGKSP 462
+ ++ SLN + S GST D +D L LP T T + +P + Y S
Sbjct: 5 KSTKMSLNAFLGDESFGSTNWADDIDDLPALPQDRT-TSTYRATPSSADAGY---NAPSS 60
Query: 463 RYEQLVSSGHSSTSPGQGSWAHRVRTQAPSRTP 561
+E + S S G GS R PS P
Sbjct: 61 TFESVRSPPESRREGGMGSGYQRDAIPIPSEPP 93
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 295 RSLNXGIARPSPGSTTLEDVLDSLLGLPSQPTRIPTPQPSP 417
R L A T E V ++ +P PTR+P P PSP
Sbjct: 735 RCLKRLFAESEHEKTMSETVSENSKWMPEMPTRMPPPGPSP 775
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.9 bits (59), Expect = 1.6
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +1
Query: 550 SRTPVPTMIDQVGTICKDTVDTPAAMPDPRRSRSAHGEHSRRKSELFAQH 699
++ P D + T + P+ MP R S+H E S S + H
Sbjct: 546 TKASTPLSTDDIATPLSSAPNPPSVMPTYARKTSSHSERSSHSSYHNSSH 595
>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 361 SLLGLPSQPTRIPTPQ-PSPRKTSSPYYLTGGKS 459
S +GL S PT P+P P + ++SP+Y +G K+
Sbjct: 159 SRIGLSSSPTNTPSPNLPVSQPSASPHY-SGDKN 191
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 601 PCISFLPGRSWSGLGSVKE 545
P +FL +SWSGL SV E
Sbjct: 452 PAAAFLQSKSWSGLDSVDE 470
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Frame = +1
Query: 253 PLDHRATPDWQDSQRSLNXGIARPSPGSTTL--EDVLDSLLGLPSQPTRIPTPQPSPRKT 426
P+ TP +S S I G++++ +++ +S L P T PTP +P+K
Sbjct: 7 PMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEIPESDLPAPQVSTFPPTPAKTPKKQ 66
Query: 427 SSPYYLTGGKSPRYEQ 474
P + +S E+
Sbjct: 67 LLPNLMLQDRSNSLER 82
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +1
Query: 334 STTLEDVLDSLLGLPSQPTR---IPTPQPSPRKTSSPYYLTGGKSP 462
S T+E+ LL P P +PTP P+P P + GG P
Sbjct: 718 SDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 313 IARPSPGSTTLEDVLDSLLGLPSQPTRIPTPQPSPRKTSSP 435
++ PG+ T D + +GLPSQP I T + +K P
Sbjct: 186 LSETEPGTPTKNDS-PAYIGLPSQPNSITTLNNTNQKFQVP 225
>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 758
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -3
Query: 718 DGLRMHYVERKVHSSDASVRHEPNGIVADLASLLEYQL 605
+ LR +E + S A VR +G+V D+ ++ EY +
Sbjct: 388 NSLRSFILENRSKSKLAPVRRYLSGLVGDILNICEYNI 425
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -1
Query: 201 SGVCGESNGFVPTKELSSQQSFWLDRGDGSRSMSPLAGSNPDT*WTIADVTSFID 37
+G G SNG VP + + + ++D+G R + A P W ADV F++
Sbjct: 263 AGTNGTSNGIVPMIRVYNNTARYVDQGGNKRPGAFAAYLEP---WH-ADVMDFLE 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,857
Number of Sequences: 5004
Number of extensions: 66343
Number of successful extensions: 217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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