Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1856
         (741 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           27   0.80 
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    27   0.80 
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          26   1.4  
AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    25   1.9  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    24   5.7  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    24   5.7  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   5.7  
AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein hom...    23   7.5  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    23   9.9  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   9.9  

>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 382 QPTRIPTPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPGQG 516
           QP + P+ QP P   S+     GG +        +G S  S G G
Sbjct: 286 QPQQQPSQQPQPSSQSNAQLTNGGSNGLLGSSSQAGGSGGSSGGG 330


>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 26.6 bits (56), Expect = 0.80
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 580 QVGTICKDTVDTPAAMPDPRRSRSAHGEHSRRKSEL 687
           Q+  +CK+  D   +  DP    +A   H  R+SEL
Sbjct: 317 QLRELCKEASDNAHSRVDPDERAAASEIHQERRSEL 352


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 421  KTSSPYYLTGGKSPRYEQLVSSGHSSTSPGQGSWAHR 531
            K  S  Y  G +SP    +VS   ++ S G G W ++
Sbjct: 906  KVLSEKYTIGDQSPGGGMMVSDTINNNSSGDGRWTYQ 942


>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
           topoisomerase protein.
          Length = 1039

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +1

Query: 262 HRATPDWQDSQRSLNXGIARPSPGSTTLEDVLDSLLGLPSQPTRIPTPQPSP 417
           H+     Q S  S + G+AR +  S  L      +L +P      P+  PSP
Sbjct: 831 HQQQQHHQPSAVSNSNGLARHNSKSRRLITATGGMLKMPPSSNSSPSSYPSP 882


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -2

Query: 320 RAIPXFRERWESCQSGVARWSSGATR 243
           R  P    RW SC+S  AR  S +TR
Sbjct: 259 RRSPRSGGRWPSCRSPPARRRSRSTR 284


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 419 ERLQARIILPVARALDTNNW*AVGTVVR 502
           +RL A + + V  AL++ NW A+G  ++
Sbjct: 556 DRLCAVVTVDVRNALNSANWTAIGQALQ 583


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 410 RVLERLQARIILPVARALDT 469
           R+LER+Q ++ L VARA  T
Sbjct: 805 RLLERVQRKMALRVARAFRT 824


>AF119382-1|AAD27585.1|  394|Anopheles gambiae caudal protein
           homolog protein.
          Length = 394

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 322 PSPGSTTLEDVLDSLLGLPSQPTRIPTPQPSPRKT--SSPY 438
           PSP  T    V  S +  P  PT   +PQ +PR T   SPY
Sbjct: 159 PSPPIT----VSGSDMSSPGAPTGSSSPQITPRPTPVKSPY 195


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +1

Query: 454 KSPRYEQLVSSGHSSTSPGQGSWAHRVRTQAPSRTPV 564
           +S +Y+Q V     S+   Q    HR +T  P+R  +
Sbjct: 210 ESTQYQQSVHQPQQSSRDQQHGAQHRPQTTRPNRQDI 246


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 284 CQSGVARWSSGATRXXXXXGAVRLPKQPAVS 192
           C SGV  W S +T       + R P Q  +S
Sbjct: 38  CPSGVNNWVSDSTGTAAIWASGRFPIQQIIS 68


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,605
Number of Sequences: 2352
Number of extensions: 17662
Number of successful extensions: 45
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76091949
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)