Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1856
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    26   0.43 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.7  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.0  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.2  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = +1

Query: 406 QPSPRKTSSPYYLTGGK---SPRYEQLVSSGHSSTSPGQGS 519
           Q   +++SS Y + G     SPRY    ++  +STSP   S
Sbjct: 806 QQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPAS 846


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 21/92 (22%), Positives = 35/92 (38%)
 Frame = -2

Query: 383 CDGRPSSESRTSSNVVDPGDGRAIPXFRERWESCQSGVARWSSGATRXXXXXGAVRLPKQ 204
           C   P++ S  SS         A+   ++      +G +   SG++              
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 203 PAVSAGSPMALYQQKSFQASRASGWIEATVPG 108
           P VSA +    +QQ+   A+ A G   + VPG
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAFGATSSMVPG 121


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 162 KELSSQQSFWLDRG-DGSR 109
           +E+ +   FWLD+G DG R
Sbjct: 210 EEMKNIMKFWLDKGIDGFR 228


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
            receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -3

Query: 583  PGRSWSGLGSVKELGSSLGVPMNLDPGTY 497
            PGR+W G   +++        + L P  Y
Sbjct: 916  PGRAWPGDSDIRQRPIPRSDDIRLSPAAY 944


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 380 DGRPSSESRTSSNVVDPGDGRAIPXFRER 294
           DGR  SE+     + +  DG   P  RE+
Sbjct: 291 DGRGQSEAEKRLKLDEDADGAVSPLRREK 319


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +1

Query: 400 TPQPSPRKTSSPYYLTGGKSPRYEQLVSSGHSSTSPG 510
           +P P+PR  S+P   T   SP  +   ++G  S   G
Sbjct: 510 SPSPNPRIASAPSSST-SSSPPAKGAAAAGQPSKRNG 545


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +3

Query: 429 KPVLSYRWQEPSIRTIGEQWAQ*YVPGSRFMGTPSEDPSSFTDP-SPDHDRPGRNDMQ 599
           +P+++ + Q+PS    G Q +    P +   G+P  +PS    P  P    P +N  Q
Sbjct: 6   QPIITQQSQQPSSGAPGPQPSPHQSPQAPQRGSP-PNPSQGPPPGGPPGAPPSQNPSQ 62


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 494 VVRPRVKVHG 523
           VV PR+KVHG
Sbjct: 560 VVSPRLKVHG 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,683
Number of Sequences: 438
Number of extensions: 5050
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)