Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1855
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   1.0  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   9.5  
SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit |Sch...    25   9.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.5  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 632 NNSIKCYNNAVCLSHKNK 579
           NNS+KCY NA+ +S  N+
Sbjct: 93  NNSLKCYQNALAISPNNE 110


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 219 YRHFFLLPQNSKYPTTYEAVSAKVA*PIIFHNHAYNIDA 103
           Y H FL   + K+PTT  A  +  A  I  H+    I A
Sbjct: 47  YHHGFLSSPSHKHPTTASASDSDEATEIFTHSQPLPIPA 85


>SPAC167.02 |ptb1||geranylgeranyltransferase II beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -1

Query: 271 GHQDNLTLNYLNIITVLLQTFLFIATKLEISNYI*GRQRKSG 146
           GH D++T     +  + +   L +  K ++++YI G Q + G
Sbjct: 76  GHDDHITNTVYAVQVLAMLDSLHVVDKDKVASYIIGLQNEDG 117


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 73  LVRTHPNHLSSVDIISMIM 129
           ++RTHPN LS  DII  I+
Sbjct: 292 ILRTHPNTLSEKDIIPDIV 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,282
Number of Sequences: 5004
Number of extensions: 53391
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)