Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1853
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    31   0.15 
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    29   0.80 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    28   1.9  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   5.7  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    26   7.5  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   9.9  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 31.5 bits (68), Expect = 0.15
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 349  ICKRLCNRFFVCFWVLRTELGFNCPNFLKYEFKSFLISNS 230
            +CK LCN  F   W  + E+ F     L    K++L+S +
Sbjct: 1332 LCKALCNTIFPILWRPKEEINFQEAGVLTAPLKNWLVSKT 1371


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 269 KIRAIKTKL-SSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEKPESKMVATVST 430
           K R + T L SS +P+  +EA A+ L  R   + DED+    EK   K++   ST
Sbjct: 481 KSRFVFTMLPSSTFPQRLQEAEAKKLQERTSKLTDEDI-AEIEKTSVKLLEAQST 534


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 17/68 (25%), Positives = 29/68 (42%)
 Frame = +2

Query: 122  YVAEI*KNNRNADKL*SAVGQ*IKGCIHRVQETHTTTVRNEEGFEFIFKKIRAIKTKLSS 301
            Y+ E+    +   +L   + + +     R+ +     V + E FE    +I   +T LSS
Sbjct: 1105 YIKEL--KEKEYKRLKGVIEKCLSSVASRINQIKCDWVTDPEKFESCTSEISKFRTLLSS 1162

Query: 302  QYPEAYKE 325
             Y E Y E
Sbjct: 1163 DYTELYSE 1170


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 141 KTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLNSYLRK 272
           K  E LT    ++ S L+  S +FK++++ L     +LN Y+ K
Sbjct: 344 KLVEELTKQLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITK 387



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 102 IIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLNSYLRKFGQ 281
           I   ++N+L   E + E +   NQ +  +L  A +   +  Q   +M+ +L+SY+    Q
Sbjct: 392 IDECRRNLLWA-ESSCETIREENQKNIKKLNDAESLKSRLLQSRTQMQTELDSYITSNSQ 450

Query: 282 LK 287
           LK
Sbjct: 451 LK 452


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 72  GMVD-QTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLS 179
           G +D  TD+  + R    +L+ FE  T  +TN N+LS
Sbjct: 70  GPIDPNTDINQVPREPYRLLKEFEWATIDVTNDNELS 106


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 794 LVKHFKKN*DCIGSPFLIYIISNDFT*ILLSFFIVINKK 678
           LVKH++++      PFL+Y +S     IL S FI++  K
Sbjct: 477 LVKHWRES----KVPFLVYFLSAPSLAILYSCFIILVDK 511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,028,462
Number of Sequences: 5004
Number of extensions: 57598
Number of successful extensions: 188
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)