Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1853
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325     32   0.64 
02_04_0633 - 24616563-24617279                                         30   2.6  
11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502     29   3.4  
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379...    29   4.5  
08_02_1457 + 27260841-27260965,27261126-27261246,27263455-272635...    29   6.0  

>03_05_0450 - 24443396-24443501,24443642-24443794,24446213-24446325
          Length = 123

 Score = 31.9 bits (69), Expect = 0.64
 Identities = 10/39 (25%), Positives = 26/39 (66%)
 Frame = +2

Query: 242 EEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKP 358
           ++  + IF K+R++K++L++ YP+A+ +       +++P
Sbjct: 78  KDDLDHIFLKLRSMKSRLAATYPDAFPDGAMAKTMDQRP 116


>02_04_0633 - 24616563-24617279
          Length = 238

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 688 STKNLVIENSIAFINVLDLTNEKTEPVFNLYQYYYHHRNWHSQFPRNYW 542
           ST++LV   SI  ++ LDL +   +PVFNL       +N  + +P   W
Sbjct: 59  STRDLVYSASIDAVSGLDLDHPTLDPVFNL-TVRLSSQNQVTNYPNCIW 106


>11_06_0551 + 24903208-24903399,24903513-24904661,24904686-24907502
          Length = 1385

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 21/80 (26%), Positives = 33/80 (41%)
 Frame = +2

Query: 194 GCIHRVQETHTTTVRNEEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDE 373
           G  H V    TTT  +++  E +      ++     Q PEA K  +   LA  KP   D+
Sbjct: 420 GTSHDVATATTTTTFDKDQIEEMIYIHMELQDMQPPQVPEAGKSLLKAELATPKPADQDD 479

Query: 374 DLKPSEEKPESKMVATVSTE 433
               S  +   + +A V +E
Sbjct: 480 HEFTSAIEETKRKIAQVGSE 499


>04_04_0211 -
           23636377-23636532,23636624-23636805,23637853-23637959,
           23637997-23638280
          Length = 242

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 278 AIKTKLSSQYPEAYKEAVAESLANRK--PLVDDEDLKPSEEKPESKMVATVSTETL 439
           AIK K    +P+A K A A + A  K  P  D +  +PS  KP    + + S+  L
Sbjct: 27  AIKAKHGGAFPKAEKPAAAAAAAAPKFYPADDVKPRQPSTRKPNPTKLRSPSSSNL 82


>08_02_1457 + 27260841-27260965,27261126-27261246,27263455-27263543,
            27263776-27263860,27263970-27264074,27264446-27264527,
            27264573-27264686,27265029-27265330,27265519-27266114,
            27266216-27266376,27266489-27266592,27266697-27266856,
            27266942-27267105,27267213-27267545,27267640-27267930,
            27268276-27268359,27268430-27268563,27268665-27268892,
            27268993-27269164,27269263-27269517,27269778-27270047
          Length = 1324

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 207  LWMQPLIYWPTADYNLSAFLLFFQISATYSFV 112
            LW Q   YW  +++N+  F+  F +S  +  V
Sbjct: 1054 LWKQNCAYWKNSEHNVVRFINTFAVSIMFGIV 1085


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,858,870
Number of Sequences: 37544
Number of extensions: 306063
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)