Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1853
         (827 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT004913-1|AAO49166.1|  212|Drosophila melanogaster GM01172p pro...   106   3e-23
AE014296-2150|AAF49911.1|  212|Drosophila melanogaster CG10681-P...   106   3e-23
AY113652-1|AAM29657.1|  918|Drosophila melanogaster SD14970p pro...    30   4.4  
AE014296-1695|AAF50237.1|  918|Drosophila melanogaster CG3335-PA...    30   4.4  

>BT004913-1|AAO49166.1|  212|Drosophila melanogaster GM01172p
           protein.
          Length = 212

 Score =  106 bits (255), Expect = 3e-23
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
 Frame = +3

Query: 18  IECFQNY--TAPEVFVQGLAGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRL 191
           +E F  +  +A E F+Q LAGMV+Q DVE +IRAQK MLQRFEKT EML NCN LS SRL
Sbjct: 19  LESFTGFGNSAAEAFIQSLAGMVNQGDVETMIRAQKQMLQRFEKTNEMLLNCNALSQSRL 78

Query: 192 RAASTEFKKHTQLLFEMRKDLNSYLRKFGQLK 287
           ++AS +FK+H + L EM+KDL+   RK   +K
Sbjct: 79  KSASEDFKRHVKCLSEMKKDLDYIFRKIRIIK 110



 Score = 36.3 bits (80), Expect = 0.051
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 242 EEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDED--LKPSEEKP 400
           ++  ++IF+KIR IK KL SQ+P  Y E   +  +  +   DD +   K + E P
Sbjct: 96  KKDLDYIFRKIRIIKQKLQSQFPAIYAEVQPQRSSLAEEAEDDTEAQAKKTAETP 150


>AE014296-2150|AAF49911.1|  212|Drosophila melanogaster CG10681-PA
           protein.
          Length = 212

 Score =  106 bits (255), Expect = 3e-23
 Identities = 53/92 (57%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
 Frame = +3

Query: 18  IECFQNY--TAPEVFVQGLAGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRL 191
           +E F  +  +A E F+Q LAGMV+Q DVE +IRAQK MLQRFEKT EML NCN LS SRL
Sbjct: 19  LESFTGFGNSAAEAFIQSLAGMVNQGDVETMIRAQKQMLQRFEKTNEMLLNCNALSQSRL 78

Query: 192 RAASTEFKKHTQLLFEMRKDLNSYLRKFGQLK 287
           ++AS +FK+H + L EM+KDL+   RK   +K
Sbjct: 79  KSASEDFKRHVKCLSEMKKDLDYIFRKIRIIK 110



 Score = 36.3 bits (80), Expect = 0.051
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 242 EEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDED--LKPSEEKP 400
           ++  ++IF+KIR IK KL SQ+P  Y E   +  +  +   DD +   K + E P
Sbjct: 96  KKDLDYIFRKIRIIKQKLQSQFPAIYAEVQPQRSSLAEEAEDDTEAQAKKTAETP 150


>AY113652-1|AAM29657.1|  918|Drosophila melanogaster SD14970p
           protein.
          Length = 918

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 263 FKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEE-KPESKMV 415
           FKK+   K K +  Y E   E V     + +P++   + KP EE KPE K +
Sbjct: 604 FKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEAKPEEKPI 655


>AE014296-1695|AAF50237.1|  918|Drosophila melanogaster CG3335-PA
           protein.
          Length = 918

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 263 FKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEE-KPESKMV 415
           FKK+   K K +  Y E   E V     + +P++   + KP EE KPE K +
Sbjct: 604 FKKLAYSKFKNAPLYLEWAPEQVFTKTLSGEPVIPKSEPKPKEEVKPEEKPI 655


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,273,740
Number of Sequences: 53049
Number of extensions: 581553
Number of successful extensions: 1673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3921660132
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)