Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1853
(827 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97006-4|AAC47964.1| 140|Caenorhabditis elegans Hypothetical pr... 58 8e-09
AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical ... 32 0.58
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 31 1.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 31 1.0
AF045638-7|AAQ91907.1| 242|Caenorhabditis elegans Hypothetical ... 30 1.8
AF045638-6|AAO44909.1| 212|Caenorhabditis elegans Hypothetical ... 30 1.8
AF045638-5|AAC02562.3| 544|Caenorhabditis elegans Hypothetical ... 30 1.8
Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical p... 30 2.3
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL132948-3|CAC51073.1| 161|Caenorhabditis elegans Hypothetical ... 28 7.1
AF036705-3|AAB95171.1| 556|Caenorhabditis elegans Hypothetical ... 28 7.1
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 28 9.4
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 28 9.4
>U97006-4|AAC47964.1| 140|Caenorhabditis elegans Hypothetical
protein C13F10.2 protein.
Length = 140
Score = 58.0 bits (134), Expect = 8e-09
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +3
Query: 33 NYTAPEV--FVQGLAGMVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAAST 206
++ PE + L +D+ ++ II Q+ L+RFEKT EML NC QL R+ A
Sbjct: 27 SFDMPETPHLIDSLTSQIDEFTIQSIIDTQRQSLKRFEKTNEMLMNCAQLGDRRIEKAKR 86
Query: 207 EFKKHTQLLFEMRKDLNSYLRKFGQLK 287
+ H + + +M+ DL +K K
Sbjct: 87 DSVGHKETILQMKTDLEFIFKKIRMFK 113
Score = 44.8 bits (101), Expect = 8e-05
Identities = 22/42 (52%), Positives = 26/42 (61%)
Frame = +2
Query: 227 TTVRNEEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANR 352
T ++ + EFIFKKIR KT LSS+YPE Y E AE R
Sbjct: 94 TILQMKTDLEFIFKKIRMFKTVLSSKYPEVYAEVSAELTPKR 135
>AF016437-1|AAB65884.2| 690|Caenorhabditis elegans Hypothetical
protein F13H6.1 protein.
Length = 690
Score = 31.9 bits (69), Expect = 0.58
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 239 NEEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAES-LANRKPLVDDEDLKPSEEKPESKMV 415
N+ + + + I++ T ++S E KE V + ++KPL+ L PSEE E ++
Sbjct: 255 NDTSSKIMHQTIKSESTMMNSFCSERLKEIVTRAGEQDQKPLMALRRLMPSEETEEEQVS 314
Query: 416 ATVSTETL 439
A ST L
Sbjct: 315 AFTSTSLL 322
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +2
Query: 200 IHRVQETHTTTVRNEEGFEF------IFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPL 361
+ RV ET TTT E FE + + + KT S + +EA +++
Sbjct: 5823 VERVIETTTTTTVTSEHFEHEDEHAQLHDTVSSEKTSSSEPVEQTLEEADITEETHQRFS 5882
Query: 362 VDDEDLKPSEEKPESKMVATVST 430
+DE S EKP + T ST
Sbjct: 5883 AEDEHQPTSTEKPVHGFMETTST 5905
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 31.1 bits (67), Expect = 1.0
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
Frame = +2
Query: 200 IHRVQETHTTTVRNEEGFEF------IFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPL 361
+ RV ET TTT E FE + + + KT S + +EA +++
Sbjct: 5823 VERVIETTTTTTVTSEHFEHEDEHAQLHDTVSSEKTSSSEPVEQTLEEADITEETHQRFS 5882
Query: 362 VDDEDLKPSEEKPESKMVATVST 430
+DE S EKP + T ST
Sbjct: 5883 AEDEHQPTSTEKPVHGFMETTST 5905
>AF045638-7|AAQ91907.1| 242|Caenorhabditis elegans Hypothetical
protein C35B1.2c protein.
Length = 242
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 275 RAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEK 397
RA++ K QY +A+ E V + L + P V D+D +PS K
Sbjct: 83 RAVRVKSYQQY-DAFDELVEQDLDDSDPEVMDDDGEPSTSK 122
>AF045638-6|AAO44909.1| 212|Caenorhabditis elegans Hypothetical
protein C35B1.2b protein.
Length = 212
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 275 RAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEK 397
RA++ K QY +A+ E V + L + P V D+D +PS K
Sbjct: 83 RAVRVKSYQQY-DAFDELVEQDLDDSDPEVMDDDGEPSTSK 122
>AF045638-5|AAC02562.3| 544|Caenorhabditis elegans Hypothetical
protein C35B1.2a protein.
Length = 544
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 275 RAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEK 397
RA++ K QY +A+ E V + L + P V D+D +PS K
Sbjct: 83 RAVRVKSYQQY-DAFDELVEQDLDDSDPEVMDDDGEPSTSK 122
>Z22176-11|CAA80141.1| 784|Caenorhabditis elegans Hypothetical
protein ZK1098.3 protein.
Length = 784
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/63 (31%), Positives = 32/63 (50%)
Frame = +2
Query: 251 FEFIFKKIRAIKTKLSSQYPEAYKEAVAESLANRKPLVDDEDLKPSEEKPESKMVATVST 430
FE I +++ K + S+ E+ KE E + + DEDLK SEE ++ + T S
Sbjct: 20 FEIIDARMKIFKDIVKSKSSESVKE---EQIYQKSLEFFDEDLKSSEESVSNEEIKTGSE 76
Query: 431 ETL 439
+ L
Sbjct: 77 KEL 79
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 84 QTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLS 179
+ D I++A KN+++ FEK E++ Q S
Sbjct: 554 EQDRSFIVKAMKNIIENFEKAIEIIEKATQTS 585
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 VFVQGLAGMVDQTDV-EVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKH 221
+F G+A + TDV E R QK + + F+KTTE L ++ ++ +++ K+H
Sbjct: 1661 IFASGIATREENTDVLEEEERIQKRV-EEFKKTTENLEIQKEVVLTKEEVDNSDVKEH 1717
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 4.1
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 VFVQGLAGMVDQTDV-EVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKKH 221
+F G+A + TDV E R QK + + F+KTTE L ++ ++ +++ K+H
Sbjct: 1661 IFASGIATREENTDVLEEEERIQKRV-EEFKKTTENLEIQKEVVLTKEEVDNSDVKEH 1717
>AL132948-3|CAC51073.1| 161|Caenorhabditis elegans Hypothetical
protein Y39B6A.4 protein.
Length = 161
Score = 28.3 bits (60), Expect = 7.1
Identities = 19/56 (33%), Positives = 28/56 (50%)
Frame = +3
Query: 138 EKTTEMLTNCNQLSASRLRAASTEFKKHTQLLFEMRKDLNSYLRKFGQLKPSSVLN 305
E+T + T + +LR S EF K T + + ++L K G L P+SVLN
Sbjct: 104 EQTEFVRTEYTDMEYKKLRTYS-EFLKRTWNMRKCCENLKILTTKKGSLSPNSVLN 158
>AF036705-3|AAB95171.1| 556|Caenorhabditis elegans Hypothetical
protein F37C4.5a protein.
Length = 556
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 221 HTTTVRNEEGFEFIFKKIRAIKTKLSSQYPEAYKEAVAES 340
H +V+N+EG EF+ + R + K + E K+ VA+S
Sbjct: 72 HDVSVKNQEGAEFVIPE-RVLAIKAIFEEKERAKDKVADS 110
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +3
Query: 75 MVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKK-HTQLLFEMRKD 251
+ + T + ++ K + +F +T E LTN +S + +TEF D
Sbjct: 21 LTNSTPLSLLGPCYKRCVTKFGETKEQLTNAETISLEYDVSNNTEFSLCKLGCNSHEYTD 80
Query: 252 LNSYLRKFGQLKPSSVLNTQKHTKKR 329
LN ++GQL +L T + R
Sbjct: 81 LNLAAFRYGQLAYQKILTTVEDVPTR 106
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 27.9 bits (59), Expect = 9.4
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +3
Query: 75 MVDQTDVEVIIRAQKNMLQRFEKTTEMLTNCNQLSASRLRAASTEFKK-HTQLLFEMRKD 251
+ + T + ++ K + +F +T E LTN +S + +TEF D
Sbjct: 21 LTNSTPLSLLGPCYKRCVTKFGETKEQLTNAETISLEYDVSNNTEFSLCKLGCNSHEYTD 80
Query: 252 LNSYLRKFGQLKPSSVLNTQKHTKKR 329
LN ++GQL +L T + R
Sbjct: 81 LNLAAFRYGQLAYQKILTTVEDVPTR 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,749,982
Number of Sequences: 27780
Number of extensions: 321905
Number of successful extensions: 937
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 937
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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