Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1851
(823 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 73 7e-14
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 33 0.037
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 28 1.4
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 5.6
SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi... 26 7.4
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 26 7.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 26 7.4
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 25 9.8
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 72.5 bits (170), Expect = 7e-14
Identities = 35/82 (42%), Positives = 50/82 (60%)
Frame = +2
Query: 263 PIXXXXXVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMXVNDLILLGCGGDYADFQYL 442
PI V+ +KF G +IA D L SYGSLARF D R+ V D ++G GGD +D+Q +
Sbjct: 39 PIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDYQQI 98
Query: 443 KDIIQQKIIDERCVGDGLQLKP 508
+ ++++ I E GDG L+P
Sbjct: 99 QRLLEKLEIKEGNYGDGYALQP 120
Score = 67.7 bits (158), Expect = 2e-12
Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 5/95 (5%)
Frame = +1
Query: 502 QARSLHCWLTRVLYNKRSKMDPLWNSYVVAGI--QDGEPFLGAVDKLGTAYEDAVISNGL 675
Q +H +L++VLY +R+K+DP WN +VAG+ ++ EP++ D GT Y I+ G
Sbjct: 119 QPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENKEPYVAFADLRGTTYSAPAIATGF 178
Query: 676 GAYMATPLLRDAVDKG---PLDQETAIAVVRKVWR 771
++A P+LR A D L +E+A A + + R
Sbjct: 179 AMHLALPMLRKATDDDRWKTLSKESARATIDECMR 213
Score = 25.4 bits (53), Expect = 9.8
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 765 MEVLFYRDARAFQRYQL 815
M VLFYRDAR+ ++ +
Sbjct: 212 MRVLFYRDARSLNKFSV 228
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 33.5 bits (73), Expect = 0.037
Identities = 21/60 (35%), Positives = 29/60 (48%)
Frame = +2
Query: 287 IGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMXVNDLILLGCGGDYADFQYLKDIIQQKI 466
+ + D ++AGDT G R PRV V D +++G G AD L IQQ+I
Sbjct: 17 VAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQRI 76
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 284 VIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMXVNDLILLGCGGDYADFQYLKDIIQQ 460
++GV K C++ G DT + G + ++C ++ ++ I G AD +++ +I
Sbjct: 38 IVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVTSMISS 96
Query: 461 KI 466
I
Sbjct: 97 NI 98
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 311 CVIAGDTLGSYGSLARFRDCPRVMXVNDLILL 406
C AG +LG Y +L+ D + + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853
>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
Usp105|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 7.4
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = -1
Query: 754 QPQ*QFLGPEVLYPLRPSVEESPCKLL-ARSRSQHLHR-LFPIYQQLRERVHH 602
QP Q L P+VL +R V P K++ A S+ + R I +++R R+++
Sbjct: 192 QPIQQLLPPDVLASIRADVTREPAKVVSAGSKQITVERGELEIEREMRARIYN 244
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = -1
Query: 691 SPCKLLARSRSQH---LHRLFPIYQQLRERVHHPEYRQ 587
SP ++L S + H L L P +++ +E H P +RQ
Sbjct: 55 SPLRILGISSNSHNVNLFHLSPEFKRFKEDYHSPWFRQ 92
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.8 bits (54), Expect = 7.4
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 700 VEESPCKLLARSRSQHLHRLFPIYQQ 623
+ E+ KLLA+S ++H+ LF YQ+
Sbjct: 583 LNENVAKLLAQSTNKHVATLFSDYQE 608
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 9.8
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -1
Query: 469 NDFLLNDILQILKISIVSSA 410
NDFL+ D+L ILK+S SS+
Sbjct: 14 NDFLIADMLLILKLSPRSSS 33
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,459
Number of Sequences: 5004
Number of extensions: 71645
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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