Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1851
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 77 2e-14
03_02_0750 + 10909130-10909616,10912257-10912916,10913139-109135... 32 0.48
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 32 0.63
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 31 1.5
06_03_0138 + 17093196-17093325,17095704-17095804,17096224-170962... 30 1.9
01_05_0751 + 24904854-24905640,24905747-24905805 30 2.6
01_06_1588 + 38474698-38477169 29 3.4
10_08_0898 + 21424379-21424792,21424974-21425723 29 5.9
04_04_1296 + 32437089-32437386,32437422-32437429 29 5.9
12_02_1275 - 27482784-27483272 28 7.8
12_02_1215 + 27070164-27070302,27070308-27071098 28 7.8
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 28 7.8
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 28 7.8
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 76.6 bits (180), Expect = 2e-14
Identities = 37/89 (41%), Positives = 58/89 (65%), Gaps = 4/89 (4%)
Frame = +1
Query: 508 RSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDG----EPFLGAVDKLGTAYEDAVISNGL 675
+ +H +LTRV+YN+R+K DPLWNS V+ G++ G E +LG V+ +GT +E+ I+ G
Sbjct: 447 KEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKKGPKGEEKYLGMVNMIGTHFEENHIATGF 506
Query: 676 GAYMATPLLRDAVDKGPLDQETAIAVVRK 762
G +MA P+LR + + E A+ +V K
Sbjct: 507 GNHMAIPILRTEW-REDMTFEEAVKLVEK 534
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = +2
Query: 263 PIXXXXXVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMXVNDLILLGCGGDYADFQYL 442
P +I +K+ G ++A DT SYGS R++ R+ V L+G G+++DFQ +
Sbjct: 365 PYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEI 424
Query: 443 KDIIQQKIIDERCVGDGLQLKP 508
+ + + + DG L P
Sbjct: 425 LRYLDELTLSDHMWDDGNSLGP 446
>03_02_0750 +
10909130-10909616,10912257-10912916,10913139-10913544,
10914376-10914757,10914918-10915679,10916106-10916165,
10916695-10917105
Length = 1055
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -1
Query: 619 RERVHHPEY-RQPHSCSRGDPSCSSCCRGHESTSSAENGLELETISNTAL 473
R ++HP Y R+P SCS G C CCR + G +++ AL
Sbjct: 208 RALLNHPNYARRPRSCS-GCVMCGGCCRRRGGAGAGGGGRGTASLAVAAL 256
>06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 31.9 bits (69), Expect = 0.63
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 126 MGDTMNPTPLWQNGPS---PGAFY-NFPGNASTIAPSRHGVQDFTAHQRAPSRPPQLSSE 293
MG + PLWQ GP PG Y FPGN + VQ++ R+ ++ L++E
Sbjct: 1059 MGQALAGVPLWQLGPESRHPGVPYIVFPGNVGDNSALAKVVQNWACPSRSSAKELLLNAE 1118
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/61 (21%), Positives = 30/61 (49%)
Frame = +2
Query: 284 VIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMXVNDLILLGCGGDYADFQYLKDIIQQK 463
++G+ F G V+ DT + G + ++C ++ + I G AD + + D++ +
Sbjct: 41 IVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQ 100
Query: 464 I 466
+
Sbjct: 101 L 101
>06_03_0138 +
17093196-17093325,17095704-17095804,17096224-17096292,
17096403-17097650,17097763-17097871,17099459-17099655,
17099732-17099842,17099927-17100079
Length = 705
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 7/83 (8%)
Frame = +3
Query: 150 PLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHQRAPSRPPQLSSELSLTRDVLSPVT 329
P W + P P + P + +T P H Q + + P PQ SL SP+
Sbjct: 146 PSWNSSPMPSSANGAPASTTTADPGSHNGQ---SGIQMPPPLPQYQPGASLPSWNSSPMP 202
Query: 330 HWARTG-------HWPGFETVPA 377
A +WPGF T P+
Sbjct: 203 SSANGAGLTMPPMYWPGFYTPPS 225
>01_05_0751 + 24904854-24905640,24905747-24905805
Length = 281
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 550 SCCRGHESTSSAENGLELETISNTALINDFLLN 452
SCC SSAE+G E E S+ A +DF+++
Sbjct: 48 SCCSASAPASSAESGSESEDYSSCAGESDFVIS 80
>01_06_1588 + 38474698-38477169
Length = 823
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Frame = +3
Query: 147 TPLWQNGPSPGAFYNFP-GNASTIAPSRHGVQ------DFTAHQRAPSRPPQLSSELSLT 305
TP+WQ S GA ++ + + HG D+ P +P ++ LS T
Sbjct: 111 TPVWQTNSSSGAAAAAELTDSGNLVVTSHGGDVLWQSFDYPTDTLLPGQPVTATARLS-T 169
Query: 306 RDVLSPVTHWA 338
DVL P +H+A
Sbjct: 170 TDVLHPTSHYA 180
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 120 AFMGDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHG 233
A MGD M L +PGA FP +A+ A HG
Sbjct: 62 AAMGDAMRVDDLLDLSNTPGAHDFFPASAAAAAAGDHG 99
>04_04_1296 + 32437089-32437386,32437422-32437429
Length = 101
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -1
Query: 736 LGPEVLYPLRPSVEESPCKLLARSRSQHLHRLFPIYQQLRERVHHPEYRQ 587
LGPE + P S ++P +LL R ++HL + RER H + Q
Sbjct: 33 LGPESMQPA--SAMQAPPQLLLRYSNRHLRNAVAVPAYERERESHLDAEQ 80
>12_02_1275 - 27482784-27483272
Length = 162
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 346 PVRAQCVTGDNTSLVKLNSDDSCGGRDGAR 257
P R + V G T L + ++ D GGR GAR
Sbjct: 61 PARYRLVEGSETGLAQRSAADDSGGRLGAR 90
>12_02_1215 + 27070164-27070302,27070308-27071098
Length = 309
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 346 PVRAQCVTGDNTSLVKLNSDDSCGGRDGAR 257
P R + V G T L + ++ D GGR GAR
Sbjct: 224 PARHRLVEGSETGLAQRSAADDSGGRLGAR 253
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +2
Query: 374 RVMXVNDLILLGCGGDYADFQYLKDIIQQKI 466
RVM V+DL+LLG YAD ++ ++ + K+
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKL 77
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 340 RAQCVTGDNTSLVKLNSDDSCGGRDGAR 257
R + V G TSL + + DS GGR GAR
Sbjct: 208 RHRLVEGSETSLAQRGTADSSGGRLGAR 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,707,869
Number of Sequences: 37544
Number of extensions: 523834
Number of successful extensions: 1685
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1684
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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