Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1851
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 68 7e-12
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 31 1.00
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 31 1.00
AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical ... 29 3.0
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 29 4.0
Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical p... 29 5.3
Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical pr... 28 7.0
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 68.1 bits (159), Expect = 7e-12
Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 10/95 (10%)
Frame = +1
Query: 508 RSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGE--------PFLGAVDKLGTAYEDAVI 663
++LH +LT +LY KR KM+P+WN+ VVAG+++ E PF+G + + G AY+ I
Sbjct: 93 KALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNNKETSTPFIGVITQKGCAYQVKHI 152
Query: 664 SNGLGAYMATPLLRDAVDK--GPLDQETAIAVVRK 762
+ GLGA++ + D K L +E A AV+RK
Sbjct: 153 ATGLGAFLLNQAVEDEWRKKGEDLSREEAEAVLRK 187
Score = 59.7 bits (138), Expect = 2e-09
Identities = 24/70 (34%), Positives = 46/70 (65%)
Frame = +2
Query: 260 SPIXXXXXVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMXVNDLILLGCGGDYADFQY 439
+P VI +++ G V+ D + SYG +AR+++ R VND +L+ GGD+ADF +
Sbjct: 12 NPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHW 71
Query: 440 LKDIIQQKII 469
L+++I+++++
Sbjct: 72 LQNVIERQVL 81
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 VIAGDTLGSYGSLARF-RDCPRVMXVNDLILLGCGGDYADFQYLKDIIQQKI 466
++A DT + + RD ++ +ND I+L G Y D LK ++Q ++
Sbjct: 64 IVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRL 115
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 314 VIAGDTLGSYGSLARF-RDCPRVMXVNDLILLGCGGDYADFQYLKDIIQQKI 466
++A DT + + RD ++ +ND I+L G Y D LK ++Q ++
Sbjct: 64 IVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRL 115
>AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical
protein Y15E3A.4 protein.
Length = 469
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -2
Query: 612 GFTILNTGNHIAVPEGIHLAPLVVEDTSQPAVQ 514
GF + +TG +AVP +HLA ++ + +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +3
Query: 165 GPSPGAFYNFPGNASTIAPSRHGVQDFTAHQRAPSRP 275
GPSPG N P N S + PS G PS P
Sbjct: 1396 GPSPGPSPNEPSNPSILGPSTGGDPSPGPSPNEPSNP 1432
>Z82055-10|CAB04848.2| 659|Caenorhabditis elegans Hypothetical
protein T26H2.7 protein.
Length = 659
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 712 LRPSVEESPCKLLARSRSQHLHRLFPIY 629
L+ S +ESPC L+ S+ L R+ P+Y
Sbjct: 54 LQRSDQESPCSLVTLFYSKRLKRILPLY 81
>Z81515-9|CAH04722.1| 2266|Caenorhabditis elegans Hypothetical protein
F26H11.2c protein.
Length = 2266
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 478 LCWRWSPAQARSLH 519
LCW+W ARSLH
Sbjct: 1075 LCWKWQTLNARSLH 1088
>Z81515-3|CAC42289.2| 1693|Caenorhabditis elegans Hypothetical protein
F26H11.2b protein.
Length = 1693
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 478 LCWRWSPAQARSLH 519
LCW+W ARSLH
Sbjct: 1075 LCWKWQTLNARSLH 1088
>Z81515-2|CAB04197.2| 1691|Caenorhabditis elegans Hypothetical protein
F26H11.2a protein.
Length = 1691
Score = 28.3 bits (60), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 478 LCWRWSPAQARSLH 519
LCW+W ARSLH
Sbjct: 1075 LCWKWQTLNARSLH 1088
>Z81129-3|CAB03404.1| 1262|Caenorhabditis elegans Hypothetical
protein T23F1.5 protein.
Length = 1262
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = +3
Query: 129 GDTMNPTPLWQNGPSPGAFYNFPGNASTIAPSRHGVQDFTAHQRAPSRPPQ 281
G+ PTP + F+ P +A P H +DFT+H + P+
Sbjct: 438 GERSTPTPQEEEEEMMRNFFPRPVSAQAYQPPGHQPEDFTSHINVNFKRPK 488
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,402
Number of Sequences: 27780
Number of extensions: 423976
Number of successful extensions: 1332
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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