Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1850
         (798 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         24   1.2  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.9  
AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esteras...    22   6.5  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    22   6.5  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   6.5  

>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 752 NPAYRIRSMRCQPPR 708
           NP YR R+ R +PPR
Sbjct: 230 NPYYRPRTSRTEPPR 244


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3

Query: 732 PYPVSGVAMSTPIKRHSN 785
           PYP  G   +TP+  H N
Sbjct: 388 PYPQIGSERATPVGYHQN 405


>AJ850294-1|CAH64514.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 278 GSPLTRWLRQPLVPSHR*QV 219
           G  +  W  QP++P+H  Q+
Sbjct: 285 GPVIDSWATQPVLPTHPYQI 304


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 278 GSPLTRWLRQPLVPSHR*QV 219
           G  +  W  QP++P+H  Q+
Sbjct: 285 GPVIDSWATQPVLPTHPYQI 304


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -2

Query: 278 GSPLTRWLRQPLVPSHR*QV 219
           G  +  W  QP++P+H  Q+
Sbjct: 285 GPVIDSWATQPVLPTHPYQI 304


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,258
Number of Sequences: 336
Number of extensions: 5140
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21687721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)