Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1850
(798 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w... 30 1.7
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 30 2.2
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 30 2.2
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 2.2
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 30 2.2
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 30 2.2
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 30 2.2
Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical pr... 29 3.9
AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown prote... 29 3.9
Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical pr... 28 6.7
AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical... 28 6.7
Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical ... 28 8.9
>U10402-5|AAA19066.2| 650|Caenorhabditis elegans Tryptophanyl (w)
trna synthetaseprotein 2, isoform a protein.
Length = 650
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = -1
Query: 753 QPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGNPKGTM 634
QPR P+ + +STSTH + YF + G I +LGN G++
Sbjct: 304 QPRDPNNLRLLSTSTHPTIYFTGIQPTG-IPHLGNFFGSI 342
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 759 TLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 649
+L +P V + +S YFRT+++ G L+ GN
Sbjct: 2701 SLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -1
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 759 TLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 649
+L +P V + +S YFRT+++ G L+ GN
Sbjct: 2701 SLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -1
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +3
Query: 327 HTGIRSECRSPCSRPKKR*CEILEIVLKCCECVTCVSVCFYDVRVLRSECE 479
H+G + C+ P +R CE +E + V+C+SV Y+ L S CE
Sbjct: 1653 HSGFEGDGIKKCTNPLERSCEDVEKFCGRVDHVSCLSVRIYN-GSLSSVCE 1702
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 759 TLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 649
+L +P V + +S YFRT+++ G L+ GN
Sbjct: 515 SLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 551
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -1
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 690 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 748
Query: 57 IYLL 46
++ +
Sbjct: 749 LFFV 752
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 759 TLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 649
+L +P V + +S YFRT+++ G L+ GN
Sbjct: 2701 SLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -1
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 759 TLQPRLPDTVDEMSTSTHVSAYFRTKEKDGFILYLGN 649
+L +P V + +S YFRT+++ G L+ GN
Sbjct: 2701 SLDLNIPQRVTRSAAHADISFYFRTEQEHGIPLFFGN 2737
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/64 (21%), Positives = 31/64 (48%)
Frame = -1
Query: 237 KSSLTGNSTEPRDKLISSQSGPQEYRFDGRGYATMAGRGYLTPQSNQVLLFFRTYAPNGL 58
K + N + + K I+ + DG GY + + ++ ++ L F T++P+GL
Sbjct: 2876 KGNTNVNGAQKKPK-ITDNADELVVSLDGEGYTSYKPSHWNPRKATKISLSFLTFSPHGL 2934
Query: 57 IYLL 46
++ +
Sbjct: 2935 LFFV 2938
>Z81125-5|CAB03381.2| 398|Caenorhabditis elegans Hypothetical
protein T22A3.3a protein.
Length = 398
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 249 LSQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 347
L+QPS W S D G + S P +G+RS+
Sbjct: 117 LNQPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 149
>AF408760-1|AAO27839.1| 318|Caenorhabditis elegans unknown protein
protein.
Length = 318
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 249 LSQPSCQWRPSPDPGQVRSCPRCPSLHTGIRSE 347
L+QPS W S D G + S P +G+RS+
Sbjct: 37 LNQPSNFWESSQDSGVLSSLSSSPQQRSGLRSQ 69
>Z81581-4|CAB04663.2| 568|Caenorhabditis elegans Hypothetical
protein T02E1.2 protein.
Length = 568
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 439 TLTH-VTHS-QHFNTISNISHYRFLGRLHGDRHSERIPV 329
TL H T+S QHF+ ++ Y+F G L D +E +P+
Sbjct: 342 TLAHFATYSFQHFDEFVHVVPYKFSGTLDRDLRNEIMPI 380
>AL033514-15|CAA22102.1| 272|Caenorhabditis elegans Hypothetical
protein Y75B8A.14 protein.
Length = 272
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +1
Query: 208 FCGVTCQR*LGTSGCRNHLVNGDPRRILARFGAVPDVHHYIRVSVLNADHHVVVLKNGSV 387
+C V L T G +VN DP + + AV DV I V+ + D +++ NG++
Sbjct: 18 YCSVMYNHCLST-GRTLRMVNLDPACEVFNYPAVVDVRDLISVNDVQEDEELILGPNGAL 76
Query: 388 KY 393
+
Sbjct: 77 VF 78
>Z69792-5|CAA93668.3| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 656 RYRMKPSFSFVRKYADTCVEVDISSTVSGKRGCNVDTDQTSL 781
+++ K S SFV YAD+C I T G VD ++ L
Sbjct: 462 KFKCKGSESFVSMYADSCFIDSICPTQCDCYGTTVDCNKRGL 503
>AL022270-3|CAB63434.2| 1410|Caenorhabditis elegans Hypothetical
protein F40E10.4 protein.
Length = 1410
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 656 RYRMKPSFSFVRKYADTCVEVDISSTVSGKRGCNVDTDQTSL 781
+++ K S SFV YAD+C I T G VD ++ L
Sbjct: 462 KFKCKGSESFVSMYADSCFIDSICPTQCDCYGTTVDCNKRGL 503
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,777,621
Number of Sequences: 27780
Number of extensions: 471674
Number of successful extensions: 1328
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1328
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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