Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1849X
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    30   0.19 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.5  
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    25   5.5  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    25   7.3  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   7.3  
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc...    25   7.3  

>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 30.3 bits (65), Expect = 0.19
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 160 HAEGIHLHSEHDASFCYKVTTCLCFKELFPYNCVFINVVNHVTCSQSLAR 309
           H E +H+H +HD  F  ++   + F     YN + +N    + C   ++R
Sbjct: 118 HIEYVHIHWDHDTQFALELDKLVSF---VAYNAMQLNKKVLINCQMGISR 164


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
 Frame = +2

Query: 77   FFLLRGGFN*LSMF*ISRNSNSFVPPVGMPRVSIS---ILNMMRRSVIKLPLVFVSRSFS 247
            F +LRG  N       +RN  +FVP +G   +S S    ++ +R  V+ LPL  + + FS
Sbjct: 1879 FDVLRGVSNKHKELLTARNMAAFVPLIGESLLSSSEEVQISALRFLVLLLPLK-IDQVFS 1937

Query: 248  LTTVF 262
             ++VF
Sbjct: 1938 GSSVF 1942


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 12  PMQLMFFFLFESAPMSSILKDVFFYCAVVLIS*VCFKYL 128
           P+ L FF LF +  + + +  +FF  + +L+  V F  L
Sbjct: 48  PVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLL 86


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 267 NKNTVVREKLLETK-TSGNFITERRIMFRMEMDTLGMPTG 151
           +++ V + K L T  +S NF+ E +I   + +D +  P G
Sbjct: 18  DESKVEKSKQLSTNASSSNFVKEDQIPSNLSIDNINTPQG 57


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 411 IHNILYAPLFLDDNIAC*NSCYARN 485
           I NILY P+ LD N+     C+ R+
Sbjct: 317 IRNILYGPVPLDPNVKIAIVCFDRS 341


>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/44 (25%), Positives = 22/44 (50%)
 Frame = +3

Query: 309 VMNRSTVFAFNTECSYNNFST*CYECSYSN*NIYIHNILYAPLF 440
           ++N+    AFN +CS  +     + C+    + + H+ L  P+F
Sbjct: 324 LLNQPIFQAFNKKCSRFDHEPVEWSCAQKGIDQFAHSFLRTPMF 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,076
Number of Sequences: 5004
Number of extensions: 39837
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)