Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1849X
         (547 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0293 + 2207782-2208148,2208515-2208567,2208622-2208698,220...    29   1.8  
08_02_0265 - 15012662-15013918                                         28   4.2  
05_03_0353 - 12856385-12857705,12858007-12858959                       27   7.4  
05_03_0263 + 11234850-11235044,11235413-11237341                       27   9.8  

>11_01_0293 +
           2207782-2208148,2208515-2208567,2208622-2208698,
           2209377-2209772,2209953-2210111,2210522-2210933
          Length = 487

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 200 DASCSEWRWIPSACPL 153
           DAS S+WRW PS C L
Sbjct: 103 DASYSKWRWRPSRCDL 118


>08_02_0265 - 15012662-15013918
          Length = 418

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 248 GKSSLKQRQVVTL*QNDASCSEWRWIP 168
           G +   + +V  L + DASC +WRW P
Sbjct: 263 GDAGYHEYRVYAL-ERDASCGDWRWSP 288


>05_03_0353 - 12856385-12857705,12858007-12858959
          Length = 757

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -3

Query: 185 EWRWIPSACPLGA 147
           EWRW PSA P GA
Sbjct: 78  EWRWAPSAGPSGA 90


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +2

Query: 143 FVPPVGMPRVSISILNMMRRSVIKLP-LVFVSRSFSLT 253
           F+ P+  PRV   I+N + R V   P LVF+  + S+T
Sbjct: 51  FLRPLRQPRVIAEIINTVNRGVPTGPFLVFMGVALSIT 88


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,739,856
Number of Sequences: 37544
Number of extensions: 228510
Number of successful extensions: 393
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)