Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1847
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    27   2.9  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   6.6  
SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase Lac...    25   8.7  
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    25   8.7  

>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -3

Query: 214 VSVSF*HHNGCPTLQIE----THLLLYGRNRQGGGTYPCGLT 101
           + V + H +G P LQI     TH  L+G  R+ GG Y  GL+
Sbjct: 824 LGVPYTHPDGAP-LQILSSLLTHKYLHGEIREKGGAYGAGLS 864


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 212  LRFFLTPQRLPHPSNRNAFTALR 144
            LR+F+   + P P  R  +TALR
Sbjct: 1551 LRYFMDSTKFPQPPERLEYTALR 1573


>SPBC3E7.15c |mug83|SPBC4F6.02c|sphingosine N-acyltransferase
           Lac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 69  ICITLLVVGYIVSPHGYV 122
           I +TLLV  Y V+P+GY+
Sbjct: 64  ILLTLLVGWYFVNPNGYI 81


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 216 RSPFLFNTTTAAPPFKSKRIYCFTAEIGRAVVHTRAGLQYTLP 88
           R P  F   TA   FK K + CF +      +   AG Q ++P
Sbjct: 291 RKPESFTGKTAPLSFKQKFMLCFLSMAAFISIFNVAGYQTSVP 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,055
Number of Sequences: 5004
Number of extensions: 54180
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)