Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1846
(769 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 37 0.003
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 34 0.019
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 28 1.3
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 28 1.3
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 27 3.0
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 27 3.9
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 26 5.2
SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|... 26 6.8
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.8
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 25 9.0
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.0
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 37.1 bits (82), Expect = 0.003
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +3
Query: 291 HGREGAVRILLEKFRPPVCLETEGTVKFDEYVIEGATALWCASGAGHLAIVKRLVKAGAD 470
H EG + L + PP + + D G T+L A GH+ ++K L++A AD
Sbjct: 221 HPEEGRIPSFL--YSPPPDFQVNSVIDDD-----GHTSLHWACSMGHIEMIKLLLRANAD 273
Query: 471 VNHATRTVSTPLRR 512
+ R TPL R
Sbjct: 274 IGVCNRLSQTPLMR 287
Score = 35.5 bits (78), Expect = 0.008
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +2
Query: 482 DQDGQHSTPAACFEGRLDIVKYLVRHGADIHKANKYNNTCLM 607
D DG S AC G ++++K L+R ADI N+ + T LM
Sbjct: 245 DDDGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLM 286
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 34.3 bits (75), Expect = 0.019
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +2
Query: 479 RDQDGQHSTPAACFEGRLDIVKYLVRHGADIHKANKYNNTCLMIAAYKGYLDV 637
+D GQ A G++ +VKYL+ A ++ ++ Y T L A +G+ DV
Sbjct: 137 KDLQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDV 189
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 387 IEGATALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPL 506
++G T L A+ G + +VK L+ A +N + TPL
Sbjct: 139 LQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPL 178
Score = 25.4 bits (53), Expect = 9.0
Identities = 25/68 (36%), Positives = 31/68 (45%)
Frame = +3
Query: 267 TPLITAARHGREGAVRILLEKFRPPVCLETEGTVKFDEYVIEGATALWCASGAGHLAIVK 446
TPL AA G+ V+ L+ + P L T D Y G T L A GH +
Sbjct: 143 TPLHRAAAVGKIQVVKYLISQRAP---LNTS-----DSY---GFTPLHFALAEGHPDVGV 191
Query: 447 RLVKAGAD 470
LV+AGAD
Sbjct: 192 ELVRAGAD 199
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 512 ACFEGRLDIVKYLVRHGADIHKANKYNNTCLMIAAY 619
A G + V YLV+HGAD +K CL +A +
Sbjct: 75 AAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLAVH 110
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +2
Query: 482 DQDGQHSTPAACFEGRLDIVKYLVRHGADIH 574
D+ G + A ++ I K+L+ HGAD++
Sbjct: 31 DEGGATALHWAALNQQIPICKFLLEHGADVN 61
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 393 GATALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPL 506
G T + A GH ++K LV+ G D+N + TPL
Sbjct: 37 GYTPIHAAVSYGHSDLLKILVERGGDINIRDQDGETPL 74
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Frame = -1
Query: 469 SAPALTR-RFTIAK*PAPEAHHSAVAPSITYSSNLTVPSVSKQTGGL--NFSNKILTAP 302
+AP T +FTI PAP + P + +S ++PS + Q+ + N NK ++P
Sbjct: 438 AAPVFTPGKFTIPSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSVVSNGENKPSSSP 496
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 26.6 bits (56), Expect = 3.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 390 EGATALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRR 512
+G TAL A+ G+L ++ L++AGA+V T L R
Sbjct: 236 DGHTALHWAAAMGNLEMMHALLQAGANVVAVNYLQQTSLMR 276
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 563 ADIHKANKYNNTCLMIAAYKGYLDVVSTVFSYFYNLYFYTNIIK 694
A +HK + ++ +A K YL +V + + L+FYT+ K
Sbjct: 350 AAMHKVSYSDDLMRFVAREKYYLQIVDCLCTQKDPLFFYTDFTK 393
>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.8 bits (54), Expect = 6.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -1
Query: 751 IFQIGSVVSGPIQYAQIFPLYNISIEV*IIKITKNRTHHI 632
++ I S + GP+ +FP Y + + + I K+ H+I
Sbjct: 382 LYYINSPLQGPVFARMLFPTYMLRLHLGDISPQKDPDHYI 421
>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 6.8
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 587 YNNTCLMIAAYKGYLDVVSTVFSYFYNLYFYTNIIKRKDLCVLNRPRNY*TD 742
YN ++ Y +T+F + Y LY Y ++ K VL + Y D
Sbjct: 38 YNKGRQYYQSFVVYKATANTIFQFSYLLYIYIDLTKADQTEVLQFLKTYVED 89
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 9.0
Identities = 15/61 (24%), Positives = 28/61 (45%)
Frame = -1
Query: 538 YVQASFEAGRRSGVLTVLVAWLTSAPALTRRFTIAK*PAPEAHHSAVAPSITYSSNLTVP 359
Y++A+ G G ++ + P +R I P+P+ H + P +N+T+P
Sbjct: 133 YLEATLCYGTPEGGISPSKPEVLKFPLQLKRAAI---PSPDTIHKRIFPPTNLVANITLP 189
Query: 358 S 356
S
Sbjct: 190 S 190
>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 196 LYEKKTDEIDDLLNNDVCSEELNAHP 273
+ +K+T++IDD N S+ L HP
Sbjct: 130 ILDKQTEDIDDDRNKSAVSKSLVRHP 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,178
Number of Sequences: 5004
Number of extensions: 61005
Number of successful extensions: 198
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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