Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1846
         (769 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.          25   1.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   3.4  
AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic pr...    25   3.4  
AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase pr...    23   7.9  

>AY353563-1|AAQ57599.1| 1132|Anopheles gambiae relish protein.
          Length = 1132

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +3

Query: 357 EGTVKFDEYVIEGATALWCASGAGHLAIVKRLVKAGADV 473
           +G ++ D    +G TAL  A  A +L I + L++AGA V
Sbjct: 839 QGGLRLDCTNDDGLTALQAAVYARNLKITRILLEAGASV 877



 Score = 24.2 bits (50), Expect = 4.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 399 TALWCASGAGHLAIVKRLVKAGADVNHATRTVSTPLRR 512
           T L  A       IVK L+ AGA +++     +TPL R
Sbjct: 786 TGLHLAVSCNSEPIVKALLGAGAKLHYCDYRGNTPLHR 823


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 505 SGGLLRRTPGHSQVSGQTRRRHSQ--GEQIQQHL 600
           S GL ++ P + QVS    +RH+Q   EQ+Q+ L
Sbjct: 692 SYGLQQKPPRYLQVSMDELKRHTQQRREQLQREL 725


>AF269153-1|AAF91398.1|  109|Anopheles gambiae labial homeotic
           protein protein.
          Length = 109

 Score = 24.6 bits (51), Expect = 3.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 412 HHSAVAPSITYSSNLTVPSVSKQTGGLNFSNKILT 308
           H + VAPS       +    +  TG  NF+NK LT
Sbjct: 32  HTTVVAPSAVSPHQSSFMINNNSTGRTNFTNKQLT 66


>AY056833-1|AAL23627.1| 1253|Anopheles gambiae chitin synthase
            protein.
          Length = 1253

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 214  DEIDDLLNNDVCSEELNAHPSSRQLDMGER 303
            D+ DD  ++D   EE+     + +L+M ER
Sbjct: 1209 DDFDDNYSDDDAREEMQYRRPTVELEMAER 1238


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,076
Number of Sequences: 2352
Number of extensions: 15897
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 79834176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)