Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1846
         (769 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    24   1.8  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   2.4  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   2.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.2  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/54 (24%), Positives = 22/54 (40%)
 Frame = +2

Query: 530 LDIVKYLVRHGADIHKANKYNNTCLMIAAYKGYLDVVSTVFSYFYNLYFYTNII 691
           +D+  Y +    DI K     N    I   + Y D+V  +      L++  N+I
Sbjct: 191 IDLTDYYISVEWDIIKVPAVRNEAFYICCEEPYPDIVFNITLRRKTLFYTVNLI 244


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 550 GQTRRRHSQGEQIQQHLPDDRCLQRLFGC 636
           GQ+ R     EQ+   L D R L+R   C
Sbjct: 26  GQSGRSRVSDEQLNMALSDQRYLRRQLKC 54


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 550 GQTRRRHSQGEQIQQHLPDDRCLQRLFGC 636
           GQ+ R     EQ+   L D R L+R   C
Sbjct: 26  GQSGRSRVSDEQLNMALSDQRYLRRQLKC 54


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 493 SALHSGGLLRRTPGHSQVSGQTRRRHSQGEQIQQHL 600
           + LHS  LL       Q   Q +++H Q +Q  QH+
Sbjct: 399 NTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHV 434


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 650 KPYSPHPNNL 621
           +PY PHP+NL
Sbjct: 107 QPYRPHPHNL 116


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -3

Query: 650 KPYSPHPNNL 621
           +PY PHP+NL
Sbjct: 107 QPYRPHPHNL 116


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 398 RSLDYIFIKLNCPFSF*TDRWSELLQ 321
           +++   F++   P+S  TD W ELL+
Sbjct: 138 KNIHVSFLRTVPPYSHQTDVWVELLK 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,861
Number of Sequences: 438
Number of extensions: 4376
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)