Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1845
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 151 8e-38
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 149 5e-37
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 95 6e-21
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 64 2e-11
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.76
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 1.3
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||... 27 1.8
SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr 2... 27 2.3
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 26 4.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 5.4
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 7.1
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr... 25 9.4
SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine kinase|Schizosacc... 25 9.4
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 25 9.4
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 151 bits (366), Expect = 8e-38
Identities = 63/84 (75%), Positives = 77/84 (91%)
Frame = +2
Query: 257 GKHVPRAVFVDLEPTVVDEVRTGTYRQHFHPEQIITGKEDAANNYARGHYTIGKEIVDVV 436
GK+VPR+++VDLEP V+D+VRTG YR FHPEQ+ITGKEDA+NNYARGHYT+GKE+VD V
Sbjct: 59 GKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEV 118
Query: 437 LDRIRKLADQCTGLQGFLVFHSFG 508
D+IR++AD C+GLQGFLVFHSFG
Sbjct: 119 TDKIRRIADNCSGLQGFLVFHSFG 142
Score = 93.1 bits (221), Expect = 3e-20
Identities = 39/58 (67%), Positives = 45/58 (77%)
Frame = +3
Query: 84 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSETGR 257
MRE IS+H+GQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG+
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQ 58
Score = 68.5 bits (160), Expect = 8e-13
Identities = 30/40 (75%), Positives = 38/40 (95%)
Frame = +1
Query: 511 GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 630
GTGSGF +LL+ERL+++Y KKSKL+FS+YPAPQVST+VVE
Sbjct: 144 GTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVE 183
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 149 bits (360), Expect = 5e-37
Identities = 61/84 (72%), Positives = 77/84 (91%)
Frame = +2
Query: 257 GKHVPRAVFVDLEPTVVDEVRTGTYRQHFHPEQIITGKEDAANNYARGHYTIGKEIVDVV 436
GK VPR+++VDLEP V+D+VRTG Y+ FHPEQ++TGKEDA+NNYARGHYT+GKE++D V
Sbjct: 63 GKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSV 122
Query: 437 LDRIRKLADQCTGLQGFLVFHSFG 508
L+RIR++AD C+GLQGFLVFHSFG
Sbjct: 123 LERIRRMADNCSGLQGFLVFHSFG 146
Score = 85.4 bits (202), Expect = 6e-18
Identities = 42/63 (66%), Positives = 47/63 (74%), Gaps = 5/63 (7%)
Frame = +3
Query: 84 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSD-----KTLGGGDDSFNTFFSE 248
MRE ISVH+GQAGVQIGNACWELYCLEHGI PDG P++ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 249 TGR 257
TG+
Sbjct: 60 TGQ 62
Score = 67.3 bits (157), Expect = 2e-12
Identities = 29/40 (72%), Positives = 37/40 (92%)
Frame = +1
Query: 511 GTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 630
GTGSG +LL+ERL+++YGKKS L+FS+YPAPQVST+VVE
Sbjct: 148 GTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVE 187
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 95.5 bits (227), Expect = 6e-21
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +2
Query: 257 GKHVPRAVFVDLEPTVVDEVRTGTYRQHFHPEQIITGKEDAANNYARGHYTIGKEIVDVV 436
GK+VPRAV VDLEP +D V++G + F P+ II G+ A N +A+GHYT G E+ D V
Sbjct: 57 GKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAV 116
Query: 437 LDRIRKLADQCTGLQGFLVFHSFG 508
LD +R+ A+ C LQGF + HS G
Sbjct: 117 LDVVRREAEACDALQGFQLTHSLG 140
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +1
Query: 481 GFPRVSLVRSGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE 630
GF + GTGSG +LL+ ++ +Y + FS+ PAP+ S VVE
Sbjct: 132 GFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVE 181
Score = 34.7 bits (76), Expect = 0.012
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 84 MRECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSE 248
MRE + + GQ G Q+G A W EHG+ G T + N +F+E
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIYHG--TSEAQHERLNVYFNE 53
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 63.7 bits (148), Expect = 2e-11
Identities = 31/83 (37%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +2
Query: 260 KHVPRAVFVDLEPTVVDEVRTGTYRQHFHPEQIITGKE--DAANNYARGHYTIGKEIVDV 433
+++PRA+ +DLEP VV+ + + TY ++PE I+ K A NN+A G Y+ + I +
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 434 VLDRIRKLADQCTGLQGFLVFHS 502
++D I + AD L+GF + HS
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHS 140
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Frame = +3
Query: 87 RECISVHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTLGGGDDSFNTFFSET 251
RE I++ GQ G QIG+ W+ CLEHGI PDG + S T G D + FF ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 481 GFPRVSLVRSGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQ-VSTAVVE 630
GF + + GTGSG S L+ERL+ Y KK +S++P Q VS VV+
Sbjct: 134 GFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQ 184
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 28.7 bits (61), Expect = 0.76
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 130 LATPAGSCTASSMESSLMVRCRQIRPSAVETTPLTRSSARPAGKARATS 276
++TPA + S+ + + PS+ +TTP + SS + + TS
Sbjct: 618 VSTPASNSNTGSLNGTSSFNVNSVGPSSSQTTPTSSSSITGSQSLKETS 666
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 331 VSAGTNLVDYSWFQINKDSSWHVLSRP 251
+SAGT+ + + KD++WH ++RP
Sbjct: 386 LSAGTDQTTRLFARFKKDNAWHEMARP 412
>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 992
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = -2
Query: 561 VNGETLHQK*CESGAGSTPNE*NTRKP*SPVHWSASFLILSKTTSTISL 415
VN ++ +QK ES G++ N K +P+H + S LSK +ISL
Sbjct: 528 VNEDSANQKE-ESALGTSDNSDMYEKENTPIHHNESLNQLSKDLGSISL 575
>SPBC29A3.18 |cyt1||cytochrome c1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 2.3
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +3
Query: 165 HGIQPDGQMPSDKTLGGGDDSFNTFFSETGRE--STCHELSLLIWNQL 302
H IQ D P K L G D + + RE S CH L+L+ W L
Sbjct: 71 HFIQHD--WPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHL 116
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 524 DSHHF*WSVSPLTTERSPSLSFPSILLHRCPQR 622
D HH+ S + T SP +P I++HR +R
Sbjct: 751 DWHHYALSFNHYTHFTSPIRRYPDIIVHRLLER 783
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 289 INKDSSWHVLSRPVSLK 239
+NK S WH L P+ LK
Sbjct: 566 LNKQSQWHDLENPIVLK 582
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 243 SETGRESTCHELSLLIWNQL*STRFVPALTVNISTPSRSSLAKRMLPITMPED 401
S+T T + L W++ ++ + L + S P S L + + T+PED
Sbjct: 2 SQTAPSDTEYNQRLERWSERLKSQTISHLPTDYSRPVPSRLVEAVFERTLPED 54
>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 9.4
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%)
Frame = +2
Query: 233 HVLQRDRPGKHVPRAVF------VDLEPTVVDEVRTGTY-RQHFHPEQIIT-------GK 370
H+L D GK+ P +F +++EP +++ TG + +H H + T
Sbjct: 28 HLLSHDYRGKNGPACLFKRVENVIEMEPK-TEQMSTGRFIVRHIHCCRCHTYIGWKYVSS 86
Query: 371 EDAANNYARGHYTIGKEIVDVVLDRIRKLADQC 469
+ + + GHY + E+ D VL R D C
Sbjct: 87 YEPSQKFKDGHYIL--EMQDAVLQRDDPEPDDC 117
>SPCC18.10 |||pyridoxine-pyridoxal-pyridoxamine
kinase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 439 GQDQEAG*PMHRASGFPRVSLVRSGTGSGFTSLLMERLSVDYGKK 573
G E G P FP +S V +GTG F+ LL+ + + K+
Sbjct: 204 GYSCEHGKPQLFLYQFPSLSGVFTGTGDLFSGLLLAKYREELDKR 248
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 365 GKEDAANNYAR-----GHYTIGKEIVDVVLDRIRKLADQCTGLQGFLVFHSFGVEPAPDS 529
GKE N R G +GK ++ I+K++ + G F+VF F ++ A +S
Sbjct: 226 GKELTTNPIVRKVSFTGSTNVGKILMGQSASTIKKVSMELGGNAPFIVFPDFPIDQAVES 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,215
Number of Sequences: 5004
Number of extensions: 61167
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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