Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1845
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   2.5  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   2.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 174 GFHARGSTAPSRRCQSVRRLDRCERRCIPSFCKKI 70
           GF   G      +C S     RC+ RC   FC  +
Sbjct: 24  GFGGFGGLGGRGKCPSNEIFSRCDGRC-QRFCPNV 57


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/35 (31%), Positives = 14/35 (40%)
 Frame = -2

Query: 174 GFHARGSTAPSRRCQSVRRLDRCERRCIPSFCKKI 70
           GF   G      +C S     RC+ RC   FC  +
Sbjct: 24  GFGGFGGLGGRGKCPSNEIFSRCDGRC-QRFCPNV 57


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 236 VLQRDRPGKHVPRAVFVDLEPTV 304
           VL+  R   H+    + D+EPTV
Sbjct: 233 VLEERRAQSHLEAHCYFDIEPTV 255


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +2

Query: 551 SPLTTERSPSLSFPSILLHRCPQRWWNLQLD 643
           S  T+ R  S +  +++L  CP     LQ+D
Sbjct: 837 STSTSPRPASSTAATLVLSGCPSNMMELQVD 867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,016
Number of Sequences: 438
Number of extensions: 4451
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)