Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1843X
(368 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 43 9e-05
08_01_0041 - 290333-290698,290854-291861 28 2.6
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 28 2.6
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 27 3.5
04_03_0504 + 16616026-16616137,16616613-16616768,16616884-166170... 27 4.6
06_01_1094 - 8977548-8977600,8977673-8978078 27 6.1
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 26 8.1
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 42.7 bits (96), Expect = 9e-05
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +3
Query: 249 RTIEVLQGGEDVNHYDTDVHYVFRQDAYFTWV*GVREP 362
R + +LQGGE+ Y TD +FRQ++YF ++ GVREP
Sbjct: 48 RGLVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREP 85
>08_01_0041 - 290333-290698,290854-291861
Length = 457
Score = 27.9 bits (59), Expect = 2.6
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -1
Query: 278 FTSLQNLYCPLLSLFAHLRRFVANKDNGTSRVPGPIDHVAAMSDDIMKGNFTFEWFEKIS 99
+T L L CPLL L L R D ++P P + + + G+ + F +++
Sbjct: 5 YTLLLALLCPLLLLLIKLCRAKTRDDELFDKLPSPPGRLPVIGHLHLIGSLPYVSFRELA 64
Query: 98 IR 93
I+
Sbjct: 65 IK 66
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Frame = -2
Query: 130 ILPLNGLKKYQYVIKLWWGY--KTDYMS 53
ILP NG KY +KLW+G KT++++
Sbjct: 549 ILPFNGKVKYVPELKLWFGLSAKTNHLA 576
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 146 HRTWQRRGLWALALLKCRYLCSQQTD 223
HR W+RR L L LL C + QQ D
Sbjct: 9 HRRWRRRLLPKLMLLLCAVVHGQQPD 34
>04_03_0504 +
16616026-16616137,16616613-16616768,16616884-16617045,
16618152-16618480
Length = 252
Score = 27.1 bits (57), Expect = 4.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 155 WQRRGLWALALLKCRYLCSQQTDEDEQINSKE 250
WQ L L + K R L + +E+E++NS E
Sbjct: 125 WQHVDLKVLKMEKIRELLQDENNEEEEVNSFE 156
>06_01_1094 - 8977548-8977600,8977673-8978078
Length = 152
Score = 26.6 bits (56), Expect = 6.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 115 HSKVKLPFIISSDMAATWSMGPGTLE 192
H + +PF++SS +A+W PG E
Sbjct: 27 HEEELVPFLLSSSSSASWGGLPGARE 52
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 26.2 bits (55), Expect = 8.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 191 SRVPGPIDHVAAMSDDIMKGNFTFEWFEKISI 96
SR+PG + + S G+ TFE F K I
Sbjct: 1129 SRIPGLLPDIELQSAGFTSGDITFESFVKAQI 1160
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,026,231
Number of Sequences: 37544
Number of extensions: 192064
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -