Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1843X
         (368 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...    38   0.002
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    29   1.4  
Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical p...    28   1.8  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    28   1.8  
Z81592-12|CAB04734.1|  260|Caenorhabditis elegans Hypothetical p...    28   2.4  
Z79696-3|CAB01974.1|  260|Caenorhabditis elegans Hypothetical pr...    28   2.4  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    27   5.5  
Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane...    26   9.7  
AC006642-3|AAF39832.2|  410|Caenorhabditis elegans Acyltransfera...    26   9.7  
AC006642-2|AAF39831.1|  617|Caenorhabditis elegans Acyltransfera...    26   9.7  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +3

Query: 252 TIEVLQGGEDVNHYDTDVHYV-FRQDAYFTWV*GVRE 359
           ++ +LQGG + N Y+TD   + FRQ++YF W  GV E
Sbjct: 36  SVVLLQGGVEKNRYNTDAADLPFRQESYFFWTFGVNE 72


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 63  SVLYPHHSFITY*YFFKPFKGKIAFHYIIGHGSDVVYGPWH---S*SAVIFVRNKPTKMS 233
           ++L P  S ITY YF +P++ K+    II H   ++  P     S S V +  + PT  S
Sbjct: 275 AILMPALSPITYLYFVRPYRQKV--KRIIRHPFKLLSRPHERATSNSGVFYSGDHPTHFS 332

Query: 234 K 236
           K
Sbjct: 333 K 333


>Z81542-10|CAB04419.4|  411|Caenorhabditis elegans Hypothetical
           protein F49A5.7 protein.
          Length = 411

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +1

Query: 34  YFRTYQNSCNLSYIPTTVLSRIDIFSNHSKVKLPFIISSDMAATWSMGPGTLEVPLSLFA 213
           YF T+  +C    I ++   R ++FS          ++SD   + ++   T  +P++ F+
Sbjct: 41  YFTTHHAACAADKITSSDFQRSNVFS----------LTSDSTNSEALSSSTTNIPMTTFS 90

Query: 214 TNRRR*ANKL 243
           TN    + KL
Sbjct: 91  TNEASSSTKL 100


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 63  SVLYPHHSFITY*YFFKPFKGKIAFHYIIGHGSDVVYGPWH---S*SAVIFVRNKPTKMS 233
           S+L P  S ITY YF +P++ K+    II +   ++  P     S S V + R+ P   S
Sbjct: 275 SILMPALSPITYLYFVRPYRRKV--KSIIRNPFKILSRPHERATSNSGVFYSRDHPIHFS 332

Query: 234 K 236
           K
Sbjct: 333 K 333


>Z81592-12|CAB04734.1|  260|Caenorhabditis elegans Hypothetical
           protein F54F3.4 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 206 KDNGTSRVPGPIDHVAAMSDDIMKGNFTFEWFEKISI 96
           K+ G ++V G   H+A+  D     +FT + F KI+I
Sbjct: 55  KNKGLTKVAGIAGHIASTDDQKKLVDFTLQKFGKINI 91


>Z79696-3|CAB01974.1|  260|Caenorhabditis elegans Hypothetical
           protein F54F3.4 protein.
          Length = 260

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 206 KDNGTSRVPGPIDHVAAMSDDIMKGNFTFEWFEKISI 96
           K+ G ++V G   H+A+  D     +FT + F KI+I
Sbjct: 55  KNKGLTKVAGIAGHIASTDDQKKLVDFTLQKFGKINI 91


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 32  DILGHIKTHVICLISPPQFYHVLIFFQTIQR 124
           D+L H+KT+ IC++S        I  Q+I+R
Sbjct: 21  DVLDHLKTYDICILSATARKTKCIVKQSIER 51


>Z32681-2|CAA83607.1|  687|Caenorhabditis elegans Hypothetical
           protein F56F3.2a protein.
          Length = 687

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 164 RGLWALALLKCRYLCSQQTDEDEQINSKEDNRGFA 268
           R +W+ ALL   YLC       E +N+  + R FA
Sbjct: 569 RPMWSFALLSFVYLCHHGAFSKEWLNALLEWRVFA 603


>AF173373-1|AAD51973.1|  687|Caenorhabditis elegans transmembrane
           protein NDG-4 protein.
          Length = 687

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 164 RGLWALALLKCRYLCSQQTDEDEQINSKEDNRGFA 268
           R +W+ ALL   YLC       E +N+  + R FA
Sbjct: 569 RPMWSFALLSFVYLCHHGAFSKEWLNALLEWRVFA 603


>AC006642-3|AAF39832.2|  410|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform b protein.
          Length = 410

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 16  CLFSVRYFRTYQNSCNLSYIPT-TVLSRIDIFSNHSKVKLPFIISSDMA-ATWSMGPGTL 189
           C + +R   ++   CN+ Y+P  T     D     ++VK        +    W  G    
Sbjct: 248 CGYIMRMMTSWAIICNVWYLPPMTRRDGEDAVDFANRVKKEIANKGGLVDLEWDGGLKRA 307

Query: 190 EVPLSLFATNRRR*ANKLKR 249
           +VP  + A  + R AN+L R
Sbjct: 308 KVPPKMVAKQQERYANRLSR 327


>AC006642-2|AAF39831.1|  617|Caenorhabditis elegans
           Acyltransferase-like protein 4,isoform a protein.
          Length = 617

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
 Frame = +1

Query: 16  CLFSVRYFRTYQNSCNLSYIPT-TVLSRIDIFSNHSKVKLPFIISSDMA-ATWSMGPGTL 189
           C + +R   ++   CN+ Y+P  T     D     ++VK        +    W  G    
Sbjct: 458 CGYIMRMMTSWAIICNVWYLPPMTRRDGEDAVDFANRVKKEIANKGGLVDLEWDGGLKRA 517

Query: 190 EVPLSLFATNRRR*ANKLKR 249
           +VP  + A  + R AN+L R
Sbjct: 518 KVPPKMVAKQQERYANRLSR 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,619,736
Number of Sequences: 27780
Number of extensions: 171184
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)