Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1842
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     31   0.19 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.8  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    28   1.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    28   1.8  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    27   2.3  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    27   2.3  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   5.4  
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    26   7.2  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   7.2  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    26   7.2  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   7.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   9.5  
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 500 DFINCIYVFEVTTGMEFAHPDFILLRKSGHKEVRLACTNI*GKITTGFSNA 348
           D++N + V+    G+E  + + ++LR +GH  V   C NI   I + F +A
Sbjct: 286 DYLNLVRVYTRPRGLEPDYSEPVILR-TGHSTVEDFCNNIHSSIKSQFKHA 335


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 646 DSLSTLNSSIPLKMASRAVKPLSVFGPRQCQQCFRHQTFE 527
           D LS + + +  K  S A+  LS FG ++C++C R   +E
Sbjct: 566 DVLSAVKACLEEKKISEALF-LSTFGGKECRKCVRDAFYE 604


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 11/50 (22%)
 Frame = -2

Query: 527 VHLLSHHIIDFIN-CIYVFEVTTGMEFAH----------PDFILLRKSGH 411
           +H L  HI+   + C Y  EVT  +E+ H          P+ ILL +SGH
Sbjct: 244 LHSLPKHILPEKDACFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGH 293


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/51 (25%), Positives = 27/51 (52%)
 Frame = -3

Query: 697 ISSGVLITRNSAIMGNKDSLSTLNSSIPLKMASRAVKPLSVFGPRQCQQCF 545
           +SSG+L   N+A+   +++  +    +   M  R+++  ++  P QC  CF
Sbjct: 521 LSSGIL--ENAALSATQNNSDSFAVCLACAMIQRSLERKNMSTPSQCSSCF 569


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 4   IRRRCLFSVRYFRPYQNSCNLS 69
           IR+ C + +RY RPY +S   S
Sbjct: 416 IRKECTYDIRYKRPYVSSLKYS 437


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 549 HC*HCLGPNTDSGLTAREAIFNGIDEFNVDNESL 650
           HC  C+GP TD G      I NG    N D  S+
Sbjct: 136 HCHLCIGPPTDEGFFYEMGIDNGRVITNDDYSSI 169


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/61 (21%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -3

Query: 724 TLHTYRIT-AISSGVLITRNSAIMGNKDSLSTLNSSIPLKMASRAVKPLSVFGPRQCQQC 548
           T +T ++   +SSG++   N+A+   +++  +    +   +  R+++  ++  P QC  C
Sbjct: 539 TTYTVQLEDTLSSGMI--ENAAVAATQNNSDSFAVCVACALVQRSLERKNMSTPSQCASC 596

Query: 547 F 545
           F
Sbjct: 597 F 597


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 588 LTAREAIFNGIDEFNVDNESLFPIIAELRVIKTP 689
           L+  + + N  + F +DNE+L  I A    IK+P
Sbjct: 187 LSMHQLVENSDETFCIDNEALSSIFANTLKIKSP 220


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 385 LVQASLTSLCPDFLRSMKSGWANSMPVVT 471
           +VQ++LTS       +++SG A S+PVVT
Sbjct: 423 IVQSNLTSAAMSNNSAIRSGSAASVPVVT 451


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = -2

Query: 641 IIHIELINSIKNGFSGRQATVCVWAQTMSAMFPASNF*VHLLSHHIIDFINCIYV 477
           + H++++  ++   + R +TV V A  M+ +  +S+  +  L+HH      C+ +
Sbjct: 713 VTHVKVL--LELCINARPSTVLVPAMKMATILSSSSTPMTPLNHHFFSLATCVLI 765


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/58 (25%), Positives = 26/58 (44%)
 Frame = -3

Query: 718 HTYRITAISSGVLITRNSAIMGNKDSLSTLNSSIPLKMASRAVKPLSVFGPRQCQQCF 545
           H YRI       LI +N  +   +D+ +   S +   +  R+++  +      CQQCF
Sbjct: 534 HRYRIANSEIQALI-QNGFVATTQDNSTDFASCLACAVVQRSLERRNQSTSAACQQCF 590


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -2

Query: 317  KYILYISIIVVHIFTSLQNHYCPLLSLFANLRRFVANKDNGTSRVPG 177
            KY+  +S+I++     L +   P+L +  +   +VA++ N   RV G
Sbjct: 1250 KYVQDVSLIILDEIHLLGSDRGPVLEMIVSRMNYVASQTNKKVRVLG 1296


>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 631 LNSSIPLKMASRAVKPLSVFGP 566
           L+SS+  K+ +  +KP+ VFGP
Sbjct: 5   LSSSVASKLVTLKLKPVVVFGP 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,737,553
Number of Sequences: 5004
Number of extensions: 86054
Number of successful extensions: 220
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)