Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1842
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 144 5e-35
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 40 0.002
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 29 5.7
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814 29 5.7
09_02_0469 - 9610883-9611338,9611749-9611871,9612199-9612375,961... 28 7.5
07_01_0159 - 1116786-1117153,1117251-1119936 28 7.5
04_01_0288 + 3824337-3826385 28 7.5
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 144 bits (350), Expect = 5e-35
Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 4/170 (2%)
Frame = +3
Query: 255 IVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGKSYLFVPRLPEEY 434
+V+LQGGE+ Y TD +FRQE+YF ++ GVREPG Y A+D+ +G+S LF PRLP +Y
Sbjct: 50 LVLLQGGEEQTRYCTDHLELFRQESYFAYLFGVREPGFYGAIDIVSGQSILFSPRLPADY 109
Query: 435 EVWMGKLHACSDFKNIYAVDEVYYVMR*KMYSKV*CRKHC*HCL----GPNTDSGLTARE 602
VWMG++ S FK+ Y VD V+YV + H L G NTDSG ++
Sbjct: 110 AVWMGEIKPLSYFKDRYKVDMVFYVDEITQVLQDRFSDHGKPLLFVLYGKNTDSGNYSKP 169
Query: 603 AIFNGIDEFNVDNESLFPIIAELRVIKTPEEIAVMRYVCKVSSDAHKQVM 752
A F G+++F+ D +L PI+ E RVIK+ E+A+++Y VSS+AH +VM
Sbjct: 170 ASFEGMEKFDSDLSTLHPILTECRVIKSDMELALIQYANDVSSEAHIEVM 219
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 39.9 bits (89), Expect = 0.002
Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 5/156 (3%)
Frame = +3
Query: 303 VQYVFRQEAYFTWVCGVREPGCYFALDVSTGKSYLFVPRLPEEYEVWMGKLHACSDFKNI 482
V Y FRQ + ++ G +PG L TG +F+P +E VW G+ +N
Sbjct: 150 VPYSFRQNGDYLYITGCAQPGGVAVLSEETGLC-MFMPDTSKEDVVWQGQTAGVEAAENF 208
Query: 483 YAVDEVYYV-----MR*KMYSKV*CRKHC*HCLGPNTDSGLTAREAIFNGIDEFNVDNES 647
+ D+ + + + +M + H L P+ + + R A N V + +
Sbjct: 209 FKADKAFPLSEMQKILPEMIERSKVVYHNVKTLSPSYKNLDSFRRASLNN----KVKDIA 264
Query: 648 LFPIIAELRVIKTPEEIAVMRYVCKVSSDAHKQVML 755
+ ELR IK+ EI +MR + S + Q ML
Sbjct: 265 YY--TDELRWIKSKSEIGLMRESASIVSQSLLQTML 298
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 594 AREAIFNGIDEFNVDNESLFPIIAELRVIKTPE 692
A EA+ G D FN D +++ ++ ++ TPE
Sbjct: 43 AMEAVNGGADIFNEDQHAIYKLLGRIKSESTPE 75
>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
Length = 582
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 184 TLEVPLSLFATNRRRLANKLKSGQ*WFCKEVKM*TTMILMYNMYLDRKPILHGFVALENP 363
TL+V L +FA RRR A ++ W ++ T + + N+ L H VA P
Sbjct: 23 TLQVVLHIFAGVRRRKATPVERFILWLAYQLADSTAIYAVGNLSLSSTAREHNLVAFWAP 82
Query: 364 VVIL 375
++L
Sbjct: 83 FLLL 86
>09_02_0469 -
9610883-9611338,9611749-9611871,9612199-9612375,
9614416-9614501,9615519-9615678,9616122-9617438,
9619463-9620428,9621452-9621766
Length = 1199
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -1
Query: 618 FH*KWLLGPSSHCLCLGPDNVSNVSGIKLLSTSFISSHNRLHQLHICF*SHYRH-GVCPS 442
FH +L S L P +SN+ G+ L+ RL+ LH+ HY + CP
Sbjct: 565 FHKLQMLDLSETELTELPPFISNLKGLNYLNLQGCQKLQRLNSLHLLHDLHYLNLSCCPE 624
Query: 441 RLHTPQEV 418
P+ +
Sbjct: 625 VTSFPESL 632
>07_01_0159 - 1116786-1117153,1117251-1119936
Length = 1017
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 251 PLLSLFANLRRFVANKDNGTSRVPGPIDHVAAMFDDIMKGNFI 123
P ++L +NLR + +N T +P I ++ ++ I++GN +
Sbjct: 169 PNIALLSNLRNMRLHSNNLTGIIPPEIGNITSLNTVILQGNML 211
>04_01_0288 + 3824337-3826385
Length = 682
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = +1
Query: 184 TLEVPLSLFATNRRRLANKLKSGQ*WFCKEVKM*TTMILMYNMYLDRKPILHGFVALENP 363
TL+V L +FA RRR A ++ W ++ T + + N+ L H VA P
Sbjct: 23 TLQVVLHIFAGVRRREATPVERFILWLAYQLADSTAIYAVGNLSLSSTAREHNLVAFWAP 82
Query: 364 VVIL 375
++L
Sbjct: 83 FLLL 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,502,810
Number of Sequences: 37544
Number of extensions: 520957
Number of successful extensions: 1117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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