Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1842
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...   132   3e-31
Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical p...    30   1.7  
AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    29   3.9  
AC024759-7|AAP13762.1|  483|Caenorhabditis elegans Hypothetical ...    29   5.1  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF067624-6|AAP68904.1|  264|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score =  132 bits (319), Expect = 3e-31
 Identities = 76/172 (44%), Positives = 101/172 (58%), Gaps = 5/172 (2%)
 Frame = +3

Query: 252 TIVVLQGGEDVNHYDTDVQYV-FRQEAYFTWVCGVREPGCYFALDV-STGKSYLFVPRLP 425
           ++V+LQGG + N Y+TD   + FRQE+YF W  GV E   Y A+DV S GK+ LF PRL 
Sbjct: 36  SVVLLQGGVEKNRYNTDAADLPFRQESYFFWTFGVNESEFYGAIDVRSGGKTTLFAPRLD 95

Query: 426 EEYEVWMGKLHACSDFKNIYAVDEVYYVMR*KMYS---KV*CRKHC*HCLGPNTDSGLTA 596
             Y +W GK++    FK  YAVDEV +  +    +   K    KH       NTDSG   
Sbjct: 96  PSYAIWDGKINNEQFFKEKYAVDEVVFNDKTTTIAEKLKELSAKHVYLLRAENTDSGDVL 155

Query: 597 REAIFNGIDEFNVDNESLFPIIAELRVIKTPEEIAVMRYVCKVSSDAHKQVM 752
            E  F G  +F +D E L+  +AELRV+KT +EI VMRY  K++S+AH+  M
Sbjct: 156 AEPKFAGSGDFQLDTELLYKEMAELRVVKTEKEIGVMRYASKIASEAHRAAM 207



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 163 TWSMGPGTLEVPLSLFATNRRRLANKLKS 249
           T+ +   T +VP+ LF  NR RL + LKS
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKS 30


>Z81088-11|CAB03132.1|  339|Caenorhabditis elegans Hypothetical
           protein F53F1.11 protein.
          Length = 339

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 63  SVLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVVYGPWH---S*SAVIFVRNKPTKIS 233
           ++L P  S ITY YF +P++ K+    II H   ++  P     S S V +  + PT  S
Sbjct: 275 AILMPALSPITYLYFVRPYRQKV--KRIIRHPFKLLSRPHERATSNSGVFYSGDHPTHFS 332

Query: 234 K 236
           K
Sbjct: 333 K 333


>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 63  SVLYPHHSFITY*YFFKPFKDKIAFHYIIEHGSDVVYGPWH---S*SAVIFVRNKPTKIS 233
           S+L P  S ITY YF +P++ K+    II +   ++  P     S S V + R+ P   S
Sbjct: 275 SILMPALSPITYLYFVRPYRRKV--KSIIRNPFKILSRPHERATSNSGVFYSRDHPIHFS 332

Query: 234 K 236
           K
Sbjct: 333 K 333


>AC024759-7|AAP13762.1|  483|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.7 protein.
          Length = 483

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 797 NIDSHWYSIRPGRVQHHLFVCVR*DFAYISHYSNFLWR 684
           N   HWYS++ G VQH     +  D AY    +N ++R
Sbjct: 384 NAGVHWYSMKFGPVQHTNIHELYKDRAYFDEETNLVFR 421


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -3

Query: 754 NITCLCASDETLHTYRITAISSGVLITRNSAIMGNKDSLSTLNSSIP 614
           NITCL   +       I  +  G ++ RN     ++ S S+L+ S P
Sbjct: 419 NITCLAGGETDTDVLIIEVLPGGGVVIRNGTDSKDESSGSSLSKSTP 465


>AF067624-6|AAP68904.1|  264|Caenorhabditis elegans Hypothetical
           protein M01B12.5b protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 552 NVSGIKLLSTSFISSHNRLHQLHICF*SHYRHGVCPSRLHTPQEVWAQR 406
           N   IK+  TS ++  +R  + ++     YRHG C S       VWA++
Sbjct: 164 NDLAIKIYKTSILTFKDR--ERYVTGEFRYRHGYCKSNPRKMVAVWAEK 210


>AF067624-5|AAC17564.4|  506|Caenorhabditis elegans Hypothetical
           protein M01B12.5a protein.
          Length = 506

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -1

Query: 552 NVSGIKLLSTSFISSHNRLHQLHICF*SHYRHGVCPSRLHTPQEVWAQR 406
           N   IK+  TS ++  +R  + ++     YRHG C S       VWA++
Sbjct: 164 NDLAIKIYKTSILTFKDR--ERYVTGEFRYRHGYCKSNPRKMVAVWAEK 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,727,460
Number of Sequences: 27780
Number of extensions: 483622
Number of successful extensions: 1172
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)