Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1841
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    30   0.44 
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces...    27   2.3  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    25   9.5  

>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 183  YWFLGFALLCLIVGLLTELTVMNEITLHWLFKWHEYSKFFQI*HP 317
            Y  L FALLC  V ++    V+++  L + FK+    KFF++  P
Sbjct: 1769 YSLLFFALLCTFVAMIVVPLVLDQ-KLSYQFKFENSVKFFRLMQP 1812


>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 292 EYSCHLNNQCNVISFITVNSVNNPTIKQSNAKPKN 188
           +Y   LN+  N++   T   ++ PT KQ    PKN
Sbjct: 303 DYEKELNDHVNIVKSSTYIPISIPTQKQKPTLPKN 337


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +2

Query: 554 VMVFRTLSCLIRLLSNHLKHNIKCILPIIYI 646
           +M++R +   I + S H K +++ + P IY+
Sbjct: 599 IMIYRNIDATIPIDSFHTKEHLQSLHPNIYV 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,547
Number of Sequences: 5004
Number of extensions: 62441
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)