Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1841
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical pr...    30   2.2  
L15313-10|AAP68920.1|  355|Caenorhabditis elegans Hypothetical p...    28   8.9  
L15313-9|AAP68921.1|  357|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>Z54218-1|CAA90954.1|  315|Caenorhabditis elegans Hypothetical
           protein F37B12.1 protein.
          Length = 315

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +3

Query: 84  VKLNCTYQLAVCVNNASSTLNIMGTCRLYVM*TYWFLGFALLCLIVGLLTELTVMNEITL 263
           V   C +      +++S +L+ +GTCR++ +    FL  +LL L + L  +L+   E+  
Sbjct: 235 VVYTCRFFSPTATSHSSHSLSFLGTCRVFWLNFTVFLSVSLLSLSIFLSYDLSKRLEMKR 294

Query: 264 HWLFKWHEYSKFFQI*H 314
             L     +  F++  H
Sbjct: 295 ELLGNLGFFPTFWESEH 311


>L15313-10|AAP68920.1|  355|Caenorhabditis elegans Hypothetical
           protein ZK353.1a protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 HLKHNIKCILPIIYISEAVNVNK*HYNLM*LF 697
           HLK+ IKCI   IY   +   N+ H  LM +F
Sbjct: 132 HLKNTIKCISLAIYYHISNRKNRGHERLMEIF 163


>L15313-9|AAP68921.1|  357|Caenorhabditis elegans Hypothetical
           protein ZK353.1b protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 HLKHNIKCILPIIYISEAVNVNK*HYNLM*LF 697
           HLK+ IKCI   IY   +   N+ H  LM +F
Sbjct: 134 HLKNTIKCISLAIYYHISNRKNRGHERLMEIF 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,224,031
Number of Sequences: 27780
Number of extensions: 346793
Number of successful extensions: 687
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)