Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1840
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    26   4.2  
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   5.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   5.5  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   7.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   7.3  
SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    25   9.6  
SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat protein|Schizo...    25   9.6  

>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 45  NIILFVKPLSKCFEDTYKKKYLDL-PIQINSFPFHDH*NPLRTRT 176
           N   FVKP+S    +  ++K+LD  PI   SF   D    LR R+
Sbjct: 121 NASAFVKPISVPLGNVKEEKFLDTNPIGAESFESSDGEMHLRARS 165


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +3

Query: 66  PLSKCFEDTYKKKYLDLPIQINSFPFH-DH*NPLRTRTSLQTLGPPPSIAI 215
           PLS  +    +++Y+    + N       H +PL TR S   L PPP + +
Sbjct: 446 PLSLIWNSKAREEYIKKQKEENGDNIEFSHFDPLYTRPSSHPLHPPPILGL 496


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 3    YKKLQASVILKGKFNIIL-FVKPLSKCFEDT 92
            YK LQ     +  F  I  FVK L +CFEDT
Sbjct: 996  YKNLQNMSSERPGFEPITEFVKELHRCFEDT 1026


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 490 IKDLIDQWEKLITSKLVLIKL-IKCRSNNLVLN 395
           IK+  D+W KL+T K +  K  +   S NL +N
Sbjct: 739 IKEAADRWSKLVTEKSIERKRNLAISSLNLAVN 771


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 472 QWEKLITSKLVLIKLIKCRSN 410
           Q E   TSK++L  L+KC SN
Sbjct: 678 QTEGTFTSKVILTDLLKCYSN 698


>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 506 VCTKGFILF*KKLNCLLFVTHKNVRVAIRPATSYAF 613
           VC KG  +   +L    F T+KN+ +   P  +YAF
Sbjct: 234 VCAKGLPVAHIQLTDEEFKTYKNMPIIFDPDCAYAF 269


>SPCC1620.04c |mug55||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 509

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 17/44 (38%), Positives = 26/44 (59%)
 Frame = -3

Query: 466 EKLITSKLVLIKLIKCRSNNLVLNILLHFKENKKRINI*LIVST 335
           EKL T + +L  ++     NL +  +LH+K+NKK+    LI ST
Sbjct: 76  EKLNTQESLLPDIL-----NLNVKGVLHYKDNKKQKTTRLIEST 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,396
Number of Sequences: 5004
Number of extensions: 46505
Number of successful extensions: 104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)