Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1840
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0175 + 1959565-1960431,1960886-1960955,1961537-1961704,196...    28   7.5  
07_03_0050 + 12817959-12818281,12818604-12818688,12819144-128192...    28   7.5  
07_03_1177 - 24574682-24574852,24575047-24575618,24575711-245760...    27   9.9  

>10_01_0175 +
           1959565-1960431,1960886-1960955,1961537-1961704,
           1962570-1962676
          Length = 403

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 282 LHHRPETIFQTCIDLFNPTSEC-KWRWMAVDLEFEAKFWY 166
           LH R   +  +C+ +   T E  KW+     L  EAK WY
Sbjct: 56  LHLRDFELVCSCLSIVGMTHETLKWKLFPFSLRDEAKQWY 95


>07_03_0050 +
           12817959-12818281,12818604-12818688,12819144-12819213,
           12819900-12819970,12820417-12820440
          Length = 190

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 282 LHHRPETIFQTCIDLFNPTSEC-KWRWMAVDLEFEAKFWY 166
           LH R   +  +C+ +   T E  KW+     L  EAK WY
Sbjct: 17  LHLRDFELVCSCLSIVGMTHETLKWKLFPFSLRDEAKQWY 56


>07_03_1177 -
           24574682-24574852,24575047-24575618,24575711-24576068,
           24576108-24576152
          Length = 381

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 239 CLIRPANVNGDGWRW 195
           C   P   +GDGWRW
Sbjct: 5   CTCNPRTFSGDGWRW 19


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,104
Number of Sequences: 37544
Number of extensions: 259879
Number of successful extensions: 570
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)