Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1840
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical...    28   5.1  
U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical p...    28   6.7  
AC024869-3|AAK68605.2|  452|Caenorhabditis elegans Synaptotagmin...    28   6.7  

>AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical
           protein Y41D4B.1 protein.
          Length = 368

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +1

Query: 466 PTDLLSP*YVLKLSLHKRIYFVLKEIELFIVCYT*KC*SCHPTSNIICIHHT 621
           PTDL S  + L  S+H  I         F++    KC + HP   II +H T
Sbjct: 9   PTDLDSAVFALH-SMHLAICTAALVFNAFLLYLIRKCSAFHPHMKIIMMHQT 59


>U37429-14|AAN63415.1|  400|Caenorhabditis elegans Hypothetical
           protein F09E5.2 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 564 HIKMLELPSDQQHHMHSP 617
           H+K LELP+DQ   +HSP
Sbjct: 271 HMKKLELPADQIVFLHSP 288


>AC024869-3|AAK68605.2|  452|Caenorhabditis elegans Synaptotagmin
           protein 3 protein.
          Length = 452

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 105 YLDLPIQINSFPFHD 149
           YLDLP+++NSF F++
Sbjct: 430 YLDLPVKVNSFRFYE 444


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,633,860
Number of Sequences: 27780
Number of extensions: 253746
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)