Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1838
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   2.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.8  
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos...    26   5.1  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   5.1  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    25   8.8  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.8  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 217 CSEEASADTSTSCEVVDIMKSNVDKVLDRDAKLSEL 324
           CS      T  SC  +D  K+N DK  +R ++  EL
Sbjct: 39  CSNCLKRSTIQSCIYIDPGKTNYDKRFERGSEADEL 74


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 192 PPIISPSGPVWGSAGARPPGLPPSAAI 112
           PP    + P +GS G R   +P S +I
Sbjct: 321 PPAYGMANPAYGSTGIRSSSIPSSGSI 347


>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
           Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 81  IYLELSV-RQGKWQQKVAIQVVWHQQSPRQVLMERLLEDLV 200
           +YL L +    KW+ KV     +  QSP ++ +E L+E  V
Sbjct: 456 MYLTLPLPTSAKWRHKVVYVPPFGTQSPVELYLELLMESTV 496


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 217 CSEEASADTSTSCEVVDIMKSNVDKVLDRDAKL 315
           C E    + S S  V  ++KS V  + D+D KL
Sbjct: 124 CKEAGIEEPSESLHVFTLLKSIVQGIRDKDLKL 156


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 312 LRVPVQNFIYIRLHNI 265
           L VPV+N  YI+LH++
Sbjct: 407 LNVPVKNMDYIKLHHV 422


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 23/64 (35%), Positives = 28/64 (43%)
 Frame = -3

Query: 526 TTAGAVELPPKTNQYLGIERIAAL***HQAHPLLLSSLDSVTKICFSDS*LVSKTAMPLL 347
           TT  A +  P T   L  E I      H +HP     LD +TKI      +V +TA  LL
Sbjct: 282 TTRSAADYIPYTYTALTKEEIL-----HASHPRACKLLDQITKI------MVEETAF-LL 329

Query: 346 EEHL 335
             HL
Sbjct: 330 SRHL 333


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,837
Number of Sequences: 5004
Number of extensions: 47320
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)