Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1838
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 47 1e-05
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 41 7e-04
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 41 7e-04
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 40 0.002
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 39 0.004
03_06_0242 + 32596846-32597268 29 3.0
03_05_1016 + 29726949-29727503,29728863-29729504 28 5.2
06_01_0732 + 5397217-5397327,5399010-5399831 28 6.9
03_05_0903 - 28652447-28653346,28653890-28654056,28654075-286542... 28 6.9
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 27 9.1
01_07_0005 + 40364385-40364732,40365299-40365448 27 9.1
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 46.8 bits (106), Expect = 1e-05
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 181 DYWRTSYTSADCCSEEASADTSTSC--EVVDIMKSNVDKVLDRDAKLSELDYRADALQEG 354
++ R + + S SADT E+ +M N++K+LDR ++S L + +Q+
Sbjct: 112 EFSRVLHQQMEYFSSNPSADTLNRLRGEIHTVMVDNIEKILDRGERISLLVDKTSTMQDS 171
Query: 355 ASQF*RQAKSLKNKFWLQNLK 417
A F +Q++ L+ W++N K
Sbjct: 172 AFHFRKQSRRLRRALWMKNAK 192
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 41.1 bits (92), Expect = 7e-04
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
EV +M N++KVLDR K+ L + + L+ A F + ++ K W +N+K
Sbjct: 143 EVKGVMMQNIEKVLDRGEKIELLVDKTEDLRSQAQDFRKAGTKIRRKMWWENMK 196
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/54 (35%), Positives = 32/54 (59%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
+V ++M N+DKVL+R +L L + +Q +F RQA+ +N W +N+K
Sbjct: 173 QVRNVMIDNIDKVLERGDRLELLVDKTATMQGNTMRFKRQARRFRNTVWWRNVK 226
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = +1
Query: 199 YTSADCCSEEASADTSTSCEVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQA 378
Y S D ++ + +V +M N+DKVL+R +L L + +Q +F RQA
Sbjct: 118 YYSNDPNADRINRMRGEISQVRTVMIDNIDKVLERGDRLDMLVDKTANMQGNTIRFKRQA 177
Query: 379 KSLKNKFWLQNLK 417
+ +N W +N+K
Sbjct: 178 RRFRNTTWWRNVK 190
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 289 KVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
K L R KLSEL + LQ A +F ++ ++ K WLQN+K
Sbjct: 202 KTLGRGEKLSELQDKTSDLQSQAQEFKKKGVKIRRKTWLQNMK 244
>03_06_0242 + 32596846-32597268
Length = 140
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -1
Query: 204 GVRGPPIISPSGPVWGSAG--ARPPGLPP 124
GV PP +G VW G RPPG PP
Sbjct: 22 GVGAPPYRPAAGSVWSLPGMTPRPPGPPP 50
>03_05_1016 + 29726949-29727503,29728863-29729504
Length = 398
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 192 PPIISPSGPVWGSAGARPPGLPP 124
P + P WG+AGA PP PP
Sbjct: 64 PALFRPCLGAWGAAGAPPPPPPP 86
>06_01_0732 + 5397217-5397327,5399010-5399831
Length = 310
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Frame = -1
Query: 183 ISPS-GPVWGSAGARPPGL 130
+SP GPVW S+ PPGL
Sbjct: 180 VSPQYGPVWASSAVAPPGL 198
>03_05_0903 -
28652447-28653346,28653890-28654056,28654075-28654264,
28654916-28655210,28655514-28655760,28656017-28656443
Length = 741
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = +2
Query: 98 CETRKMAAEGGNP---GGLAPAEPQTGPDGEIIGGPR 199
C A G+P +APA+P+T P E +GG R
Sbjct: 29 CRWISPTAAAGSPEAGAAVAPADPETPPPREPVGGAR 65
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 192 PPIISPSGPVWGSAGARPPGLPP 124
PP I PS P S+ PPGLPP
Sbjct: 110 PPAIPPSPPS-SSSDPPPPGLPP 131
>01_07_0005 + 40364385-40364732,40365299-40365448
Length = 165
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 186 IISPSGPVWGSAGARPPGLPPSAA 115
IISPS +A AR PG+ P+AA
Sbjct: 33 IISPSSSSSTAAAARSPGMSPAAA 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,054
Number of Sequences: 37544
Number of extensions: 338531
Number of successful extensions: 1170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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