Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1838
(621 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin... 78 6e-15
AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein. 78 6e-15
AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein. 78 6e-15
Z74472-1|CAA98946.2| 118|Caenorhabditis elegans Hypothetical pr... 71 7e-13
AF239889-1|AAF45301.1| 118|Caenorhabditis elegans synaptobrevin... 71 7e-13
Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF332208-1|AAK17979.1| 435|Caenorhabditis elegans nuclear recep... 28 4.7
Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical pr... 28 6.2
U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical pr... 28 6.2
>AF067949-5|AAC19234.1| 109|Caenorhabditis elegans Synaptobrevin
related protein 1 protein.
Length = 109
Score = 77.8 bits (183), Expect = 6e-15
Identities = 37/54 (68%), Positives = 45/54 (83%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
EVV IMK NV+KVL+RD KLS+LD RADALQEGASQF + A +LK K+W +N+K
Sbjct: 33 EVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIK 86
>AF003282-1|AAB61235.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 77.8 bits (183), Expect = 6e-15
Identities = 37/54 (68%), Positives = 45/54 (83%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
EVV IMK NV+KVL+RD KLS+LD RADALQEGASQF + A +LK K+W +N+K
Sbjct: 33 EVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIK 86
>AF003281-1|AAB61234.1| 109|Caenorhabditis elegans SNB-1 protein.
Length = 109
Score = 77.8 bits (183), Expect = 6e-15
Identities = 37/54 (68%), Positives = 45/54 (83%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
EVV IMK NV+KVL+RD KLS+LD RADALQEGASQF + A +LK K+W +N+K
Sbjct: 33 EVVGIMKVNVEKVLERDQKLSQLDDRADALQEGASQFEKSAATLKRKYWWKNIK 86
>Z74472-1|CAA98946.2| 118|Caenorhabditis elegans Hypothetical
protein F23H12.1 protein.
Length = 118
Score = 70.9 bits (166), Expect = 7e-13
Identities = 27/54 (50%), Positives = 46/54 (85%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
EV+D+M++NV+KV++RD +L+ LD+RA+ LQ GASQF + +++L+ K+W QN++
Sbjct: 43 EVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIR 96
>AF239889-1|AAF45301.1| 118|Caenorhabditis elegans
synaptobrevin-like protein protein.
Length = 118
Score = 70.9 bits (166), Expect = 7e-13
Identities = 27/54 (50%), Positives = 46/54 (85%)
Frame = +1
Query: 256 EVVDIMKSNVDKVLDRDAKLSELDYRADALQEGASQF*RQAKSLKNKFWLQNLK 417
EV+D+M++NV+KV++RD +L+ LD+RA+ LQ GASQF + +++L+ K+W QN++
Sbjct: 43 EVIDVMRNNVNKVMERDVQLNSLDHRAEVLQNGASQFQQSSRTLRQKYWWQNIR 96
>Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical
protein T26H2.9 protein.
Length = 463
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 528 PRQPGPSSYLRRRTSTSVSNE*QPYDNNTK 439
P QPGPS+Y + + NE PY ++ K
Sbjct: 107 PEQPGPSNYFDQFPWQASENEMDPYPSSPK 136
>AF332208-1|AAK17979.1| 435|Caenorhabditis elegans nuclear receptor
NHR-79 protein.
Length = 435
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 528 PRQPGPSSYLRRRTSTSVSNE*QPYDNNTK 439
P QPGPS+Y + + NE PY ++ K
Sbjct: 79 PEQPGPSNYFDQFPWQASENEMDPYPSSPK 108
>Z81138-5|CAB63320.3| 1278|Caenorhabditis elegans Hypothetical
protein W05B2.2 protein.
Length = 1278
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 202 CTRSSNNLSIRTCLGLCWCQTTWI 131
CTR++ +S CLG C C++T +
Sbjct: 49 CTRNTECVSEAICLGTCRCKSTHV 72
>Z48783-5|CAA88699.1| 1385|Caenorhabditis elegans Hypothetical
protein F33H1.4 protein.
Length = 1385
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 384 SEKQILVTESKDDNNNGCAWC 446
S+ ++ TES D NN C WC
Sbjct: 900 SDFSVVSTESADQNNLQCIWC 920
>U40797-7|AAB37546.1| 195|Caenorhabditis elegans Hypothetical
protein C28C12.3 protein.
Length = 195
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 125 GGNPGGL--APAEPQTGPDGEIIGGPR 199
GG+ GGL P P+ GP G GGPR
Sbjct: 166 GGSHGGLRGGPGGPRDGPRGGPRGGPR 192
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,988,718
Number of Sequences: 27780
Number of extensions: 280554
Number of successful extensions: 939
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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