Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1838
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.0  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -1

Query: 180 SPSGPVWGSAGARPPGLPPS 121
           SP  P  G     PPG PPS
Sbjct: 38  SPPNPSQGPPPGGPPGAPPS 57


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 414 KDDNNNGCAWCYYHRAAIRSIPRYWFVFGGN 506
           K + NN C   YY+   I  IP    V+ GN
Sbjct: 97  KYNYNNNCKKLYYNINYIEQIPIPVPVYYGN 127


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 411 SKDDNNNGCAWCYYHRAAIRSIPRYWFVFGGN 506
           + ++ NN C   YY+   I  IP    V+ GN
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 411 SKDDNNNGCAWCYYHRAAIRSIPRYWFVFGGN 506
           + ++ NN C   YY+   I  IP    V+ GN
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 411 SKDDNNNGCAWCYYHRAAIRSIPRYWFVFGGN 506
           + ++ NN C   YY+   I  IP    V+ GN
Sbjct: 101 NNNNYNNNCKKLYYNINYIEQIPIPVPVYYGN 132


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 525 RQPGPSSYLRRRTSTSVSNE*QPYDN 448
           R PG ++ L  R+STS ++    Y N
Sbjct: 92  RWPGDATGLSNRSSTSSNDPKNQYKN 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,893
Number of Sequences: 438
Number of extensions: 3896
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)