Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1835
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory recept...    25   0.54 
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    24   1.2  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   6.7  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    21   8.8  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    21   8.8  

>AM292336-1|CAL23148.2|  455|Tribolium castaneum gustatory receptor
           candidate 15 protein.
          Length = 455

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 409 KKYFLAKIKGIQGIFRNHLSL*VLLNIY 326
           ++Y  A + GIQ + RN L + + LN Y
Sbjct: 54  RRYMNAHLSGIQLVVRNLLDISLYLNAY 81


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 450 VLCFLTIKFYVQRIHYKKMFWQ 515
           + CFL + +Y+   HY   +WQ
Sbjct: 6   IACFLLLLYYIYSKHYS--YWQ 25


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 54  NYYLLSV*TFIRRR 95
           NYY++ V TF +RR
Sbjct: 79  NYYVIVVTTFYKRR 92


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 636 TSHPTNK*INYPKPVTY 586
           TSHPT+K +   + +TY
Sbjct: 43  TSHPTSKLVPPDERITY 59


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 636 TSHPTNK*INYPKPVTY 586
           TSHPT+K +   + +TY
Sbjct: 43  TSHPTSKLVPPDERITY 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,431
Number of Sequences: 336
Number of extensions: 2685
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)