Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1835
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    27   1.8  
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   4.1  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   9.5  

>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 651 QSMERTSHPTNK*INYPKP 595
           Q + R SHPTN  +N P+P
Sbjct: 356 QKVRRRSHPTNPTVNIPQP 374


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -3

Query: 424 IATKLKKYFLAKIKGIQGIFRNHLSL*VLLNIYFCPHKFYVVQGSNKYL 278
           IA KL  +F++ +  I GIF +   + VL+        F ++ G+N  L
Sbjct: 423 IAAKLSAFFVSILSVIAGIFASTFGVGVLIASALVYASFEMIVGANTSL 471


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 561 TVMLPSRTDMLPVWDNLFIC*LDGLFVPL 647
           TV L  R ++L ++  LF C + GLF+ L
Sbjct: 318 TVRLKHRLEILSLFSVLFTCIVAGLFLKL 346


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,185
Number of Sequences: 5004
Number of extensions: 41458
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)