Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1834
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0205 + 14860857-14861534,14862585-14862975,14863069-148631... 133 1e-31
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 125 3e-29
03_05_1066 + 30098780-30098866,30099139-30099225,30099318-300994... 123 1e-28
05_04_0394 - 20906923-20907146,20907251-20907340,20908380-209087... 109 3e-24
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 107 6e-24
12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,752... 42 6e-04
05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228 30 2.1
04_01_0120 + 1241241-1241321,1242827-1242857,1242999-1243612,124... 28 6.4
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 8.4
>11_04_0205 +
14860857-14861534,14862585-14862975,14863069-14863170,
14863438-14863682
Length = 471
Score = 133 bits (322), Expect = 1e-31
Identities = 62/96 (64%), Positives = 74/96 (77%)
Frame = +1
Query: 1 KEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQN 180
+EK RQR+G+E+IASENFTS V++ L S L NKYSEGMP RYYGGN+ IDEIE L ++
Sbjct: 25 REKRRQRSGIELIASENFTSFAVMEALGSALTNKYSEGMPGARYYGGNDVIDEIENLCRD 84
Query: 181 RSLEAYRLKSEEWGVNVQPYSGSPATLPFIPALSNP 288
R+L A+RL + WGVNVQPYSGSPAT AL NP
Sbjct: 85 RALAAFRLDAASWGVNVQPYSGSPATFAAYTALLNP 120
Score = 118 bits (283), Expect = 6e-27
Identities = 55/84 (65%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
Frame = +3
Query: 258 FAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTAT-KKISATSIFFESMPYKVDPKSGLIDY 434
FA YT ++ PH RIMGLDLP GGHLTHG++TA KKISATSI+FES+PYKV +G IDY
Sbjct: 111 FAAYTALLNPHDRIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSAATGYIDY 170
Query: 435 DKLAETAKLFKPRLIIAGMSCYSR 506
+KL E A F+P+LII G S Y R
Sbjct: 171 EKLEEKALDFRPKLIICGGSAYPR 194
Score = 97.5 bits (232), Expect = 9e-21
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +2
Query: 512 DYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFF 691
DY + R +AD GA L+ DMAH+SGLVAA +PFEYCD+VTTTTHK+LRGPRAG+IF+
Sbjct: 197 DYAKLRAVADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLRGPRAGMIFY 256
Query: 692 RKA*GP 709
RK P
Sbjct: 257 RKGPKP 262
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 125 bits (302), Expect = 3e-29
Identities = 57/85 (67%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 NFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTAT-KKISATSIFFESMPYKVDPKSGLID 431
NFA YTG+++PH RIMGLDLP GGHLTHG++TA KKISATSI+FES+PYKV ++G +D
Sbjct: 63 NFAAYTGLLQPHERIMGLDLPSGGHLTHGYYTAGGKKISATSIYFESLPYKVSSETGYVD 122
Query: 432 YDKLAETAKLFKPRLIIAGMSCYSR 506
YDKL E A F+P+LII G S Y R
Sbjct: 123 YDKLEEKAMDFRPKLIICGGSAYPR 147
Score = 95.1 bits (226), Expect = 5e-20
Identities = 43/66 (65%), Positives = 52/66 (78%)
Frame = +2
Query: 512 DYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFF 691
DY RFR IAD GA L+ DMAH+SGLVAA +PF+Y D+VTTTTHK+LRGPR+G+IF+
Sbjct: 150 DYARFRAIADKCGAMLLCDMAHISGLVAAQEAANPFQYSDVVTTTTHKSLRGPRSGMIFY 209
Query: 692 RKA*GP 709
RK P
Sbjct: 210 RKGLKP 215
Score = 93.1 bits (221), Expect = 2e-19
Identities = 43/73 (58%), Positives = 49/73 (67%)
Frame = +1
Query: 70 LQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNRSLEAYRLKSEEWGVNVQPYSGS 249
++ L S L NKYSEGMP RYYGGNE IDE+E L + R+L A+ L E WGVNVQPYSGS
Sbjct: 1 MEALGSPLTNKYSEGMPGSRYYGGNEVIDEVEELCRARALAAFHLDPEAWGVNVQPYSGS 60
Query: 250 PATLPFIPALSNP 288
PA L P
Sbjct: 61 PANFAAYTGLLQP 73
>03_05_1066 +
30098780-30098866,30099139-30099225,30099318-30099439,
30099580-30099656,30100135-30100259,30100497-30100589,
30100840-30100932,30101016-30101213,30101337-30101441,
30101535-30101600,30101808-30101885,30102144-30102233,
30102325-30102448,30102590-30102741
Length = 498
Score = 123 bits (297), Expect = 1e-28
Identities = 53/84 (63%), Positives = 70/84 (83%)
Frame = +3
Query: 255 NFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDY 434
NF VYT +++PH RIM LDLP GGHL+HG+ T TKKISA SIFFE+MPY++D +GLIDY
Sbjct: 136 NFHVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGLIDY 195
Query: 435 DKLAETAKLFKPRLIIAGMSCYSR 506
D++ ++A LF+P+LI+AG S Y+R
Sbjct: 196 DQMEKSAVLFRPKLIVAGASAYAR 219
Score = 121 bits (292), Expect = 5e-28
Identities = 59/95 (62%), Positives = 66/95 (69%)
Frame = +1
Query: 4 EKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNR 183
EK RQ GLE+I SENFTSV V+Q + S + NKYSEG P RYYGGNEYID E L Q R
Sbjct: 52 EKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAESLCQKR 111
Query: 184 SLEAYRLKSEEWGVNVQPYSGSPATLPFIPALSNP 288
+LEA+RL +WGVNVQP SGSPA AL P
Sbjct: 112 ALEAFRLDPAKWGVNVQPLSGSPANFHVYTALLKP 146
Score = 101 bits (241), Expect = 7e-22
Identities = 42/65 (64%), Positives = 54/65 (83%)
Frame = +2
Query: 503 KMLDYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGV 682
++ DY R R++ D A L+ADMAH+SGLVAAGV+PSPF+Y D+VTTTTHK+LRGPR +
Sbjct: 219 RLYDYDRMRKVCDKQKAILLADMAHISGLVAAGVVPSPFDYADVVTTTTHKSLRGPRGAM 278
Query: 683 IFFRK 697
IF+RK
Sbjct: 279 IFYRK 283
>05_04_0394 -
20906923-20907146,20907251-20907340,20908380-20908785,
20909264-20910247
Length = 567
Score = 109 bits (261), Expect = 3e-24
Identities = 48/87 (55%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Frame = +3
Query: 249 SGNFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTAT-KKISATSIFFESMPYKVDPKSGL 425
S NFAVYTG++ P+ RIMGLD P GGH++HG++T + KK+S SIFFE++ Y+V+P +G
Sbjct: 210 SANFAVYTGLLLPNDRIMGLDSPSGGHVSHGYYTPSGKKVSGASIFFENLSYRVNPHTGY 269
Query: 426 IDYDKLAETAKLFKPRLIIAGMSCYSR 506
IDYDK+ E A F P+++I G S Y R
Sbjct: 270 IDYDKVEEKAVDFHPKILICGASSYPR 296
Score = 96.3 bits (229), Expect = 2e-20
Identities = 48/96 (50%), Positives = 60/96 (62%)
Frame = +1
Query: 1 KEKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQN 180
+E+ RQ G+E+IASEN+ VL L S L NKYSEG+P RYY GN++ID IE L +
Sbjct: 127 RERRRQAGGVELIASENYACRAVLDALGSHLTNKYSEGLPGARYYCGNQHIDAIERLCCD 186
Query: 181 RSLEAYRLKSEEWGVNVQPYSGSPATLPFIPALSNP 288
R+L A+ L WGVNVQPYS + A L P
Sbjct: 187 RALAAFGLDPSRWGVNVQPYSCTSANFAVYTGLLLP 222
Score = 93.1 bits (221), Expect = 2e-19
Identities = 42/62 (67%), Positives = 49/62 (79%)
Frame = +2
Query: 512 DYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFF 691
DY R R +AD GA LM DMA +SGLVAA +PF+YCDIVT+TTHK+LRGPR G+IFF
Sbjct: 299 DYARMRLVADKCGAVLMCDMAQISGLVAAKECRNPFDYCDIVTSTTHKSLRGPRGGIIFF 358
Query: 692 RK 697
RK
Sbjct: 359 RK 360
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 107 bits (258), Expect = 6e-24
Identities = 49/87 (56%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Frame = +3
Query: 249 SGNFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTAT-KKISATSIFFESMPYKVDPKSGL 425
S N AVYTG++ P RIMGL+ P GGH++HG++T + KK+S SIFFES+ YKV+P++G
Sbjct: 240 SANLAVYTGLLLPKDRIMGLEPPSGGHVSHGYYTPSGKKVSGASIFFESLSYKVNPQTGY 299
Query: 426 IDYDKLAETAKLFKPRLIIAGMSCYSR 506
IDYDKL E A F P+++I G S Y R
Sbjct: 300 IDYDKLEERAMDFHPKILICGGSSYPR 326
Score = 101 bits (243), Expect = 4e-22
Identities = 52/95 (54%), Positives = 61/95 (64%)
Frame = +1
Query: 4 EKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNR 183
E+DRQ G+E+IASENF VL+ L S L NKYSEG P RYYGGN++ID IE L R
Sbjct: 158 ERDRQVRGIELIASENFVCRAVLEALGSHLTNKYSEGHPGARYYGGNQHIDGIERLCHER 217
Query: 184 SLEAYRLKSEEWGVNVQPYSGSPATLPFIPALSNP 288
+L A+ L WGVNVQPYS + A L L P
Sbjct: 218 ALAAFGLDPACWGVNVQPYSCTSANLAVYTGLLLP 252
Score = 94.3 bits (224), Expect = 9e-20
Identities = 42/62 (67%), Positives = 49/62 (79%)
Frame = +2
Query: 512 DYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIFF 691
D+ R R IAD GA LM DMAH+SGLVAA SPF+YCD+VT+TTHK LRGPR G+IFF
Sbjct: 329 DFARMRLIADKCGAVLMCDMAHISGLVAAKECRSPFDYCDVVTSTTHKNLRGPRGGIIFF 388
Query: 692 RK 697
R+
Sbjct: 389 RR 390
>12_01_0818 + 7524549-7524747,7524855-7525863,7525964-7526108,
7526206-7526295,7526404-7526553,7527333-7528094,
7528177-7528496,7528581-7528707,7528792-7528959,
7529054-7530466,7530563-7530823,7530983-7531144,
7531976-7532121,7532601-7532667,7533483-7533587
Length = 1707
Score = 41.5 bits (93), Expect = 6e-04
Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Frame = +3
Query: 303 GLDLPDGGHLTHGFFTATKKISATSIFFE-SMPYKVDPKSG 422
GL+LP GGH++ + T + K+S+ S+F E M Y V+P++G
Sbjct: 1611 GLELPSGGHVSCRYCTPSGKLSSASVFIEMEMSYMVNPQTG 1651
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +2
Query: 611 SPFEYCDIVTTTTHKTLRGPRAGVIFFRK 697
S F +CD+VT+T +K L GPR G IFFR+
Sbjct: 1677 SLFNHCDVVTST-NKNLTGPRGGTIFFRR 1704
>05_05_0162 + 22838907-22839070,22839180-22840063,22841164-22841228
Length = 370
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = +3
Query: 285 PHGRIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDYDKLA 446
P R +++ GH+ H F + T + A FF S+P+ +S +ID+ +A
Sbjct: 116 PPDRYAVIEVGVNGHVMHRFLSETGRWEAMPSFFSSLPF---GRSTIIDHPPVA 166
>04_01_0120 +
1241241-1241321,1242827-1242857,1242999-1243612,
1243726-1243796,1244233-1244478,1245267-1245393,
1245993-1246185,1246656-1247209
Length = 638
Score = 28.3 bits (60), Expect = 6.4
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 159 NRDTGTEQVSGSI-QIKIGRMGRQCTAIFRLSGNFAVYTGIVEPHGRIMGLDL 314
N + GT +V S+ Q IG++ A F G ++Y G+++P +G+ +
Sbjct: 348 NENDGTAKVKISLTQTTIGKVTAPKVAAFSSRGPSSIYPGVIKPDIAAVGVTI 400
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 322 PSGKSNPIILPWGSTMPV*TAKLPESLNMAVH*RPILPILICMLPETC 179
P+G S P+ MP+ +A + ++ ++ H RP+L + + P C
Sbjct: 229 PTGHSTPLEPVLSVPMPLASATVEQAHHLLCHVRPLLLLHCTLAPHLC 276
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,671,849
Number of Sequences: 37544
Number of extensions: 449866
Number of successful extensions: 1128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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