Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1834
(710 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effec... 141 5e-34
U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effec... 141 5e-34
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 31 0.61
AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical ... 31 0.61
U88184-7|AAK31516.1| 576|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical ... 28 7.6
AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine re... 28 7.6
>U00048-13|AAB53830.1| 484|Caenorhabditis elegans Maternal effect
lethal protein32, isoform a protein.
Length = 484
Score = 141 bits (341), Expect = 5e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +3
Query: 255 NFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDY 434
NFAVYT IV +GRIMGLDLPDGGHLTHGFFT +K+SATS FF+S+PYKVDP +GLIDY
Sbjct: 127 NFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDY 186
Query: 435 DKLAETAKLFKPRLIIAGMSCYSR 506
DKL + A LF+P+ IIAG+SCY+R
Sbjct: 187 DKLEQNAMLFRPKAIIAGVSCYAR 210
Score = 119 bits (287), Expect = 2e-27
Identities = 55/92 (59%), Positives = 66/92 (71%)
Frame = +1
Query: 4 EKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNR 183
EK RQR GLE+IASENFTS V+ L S + NKYSEG P RYYGGNE+ID++E+L Q R
Sbjct: 43 EKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKR 102
Query: 184 SLEAYRLKSEEWGVNVQPYSGSPATLPFIPAL 279
+LE + L +WGVNVQP SGSPA A+
Sbjct: 103 ALEVFGLDPAKWGVNVQPLSGSPANFAVYTAI 134
Score = 109 bits (262), Expect = 2e-24
Identities = 48/63 (76%), Positives = 57/63 (90%)
Frame = +2
Query: 509 LDYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIF 688
LDY+RFR+IA GAYLM+DMAH+SGLVAAG+IPSPFEY D+VTTTTHK+LRGPR +IF
Sbjct: 212 LDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIF 271
Query: 689 FRK 697
+RK
Sbjct: 272 YRK 274
>U00048-12|AAL27228.1| 507|Caenorhabditis elegans Maternal effect
lethal protein32, isoform b protein.
Length = 507
Score = 141 bits (341), Expect = 5e-34
Identities = 62/84 (73%), Positives = 73/84 (86%)
Frame = +3
Query: 255 NFAVYTGIVEPHGRIMGLDLPDGGHLTHGFFTATKKISATSIFFESMPYKVDPKSGLIDY 434
NFAVYT IV +GRIMGLDLPDGGHLTHGFFT +K+SATS FF+S+PYKVDP +GLIDY
Sbjct: 150 NFAVYTAIVGSNGRIMGLDLPDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDY 209
Query: 435 DKLAETAKLFKPRLIIAGMSCYSR 506
DKL + A LF+P+ IIAG+SCY+R
Sbjct: 210 DKLEQNAMLFRPKAIIAGVSCYAR 233
Score = 119 bits (287), Expect = 2e-27
Identities = 55/92 (59%), Positives = 66/92 (71%)
Frame = +1
Query: 4 EKDRQRAGLEMIASENFTSVPVLQCLSSCLHNKYSEGMPNQRYYGGNEYIDEIEILAQNR 183
EK RQR GLE+IASENFTS V+ L S + NKYSEG P RYYGGNE+ID++E+L Q R
Sbjct: 66 EKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYYGGNEFIDQMELLCQKR 125
Query: 184 SLEAYRLKSEEWGVNVQPYSGSPATLPFIPAL 279
+LE + L +WGVNVQP SGSPA A+
Sbjct: 126 ALEVFGLDPAKWGVNVQPLSGSPANFAVYTAI 157
Score = 109 bits (262), Expect = 2e-24
Identities = 48/63 (76%), Positives = 57/63 (90%)
Frame = +2
Query: 509 LDYKRFREIADANGAYLMADMAHVSGLVAAGVIPSPFEYCDIVTTTTHKTLRGPRAGVIF 688
LDY+RFR+IA GAYLM+DMAH+SGLVAAG+IPSPFEY D+VTTTTHK+LRGPR +IF
Sbjct: 235 LDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIF 294
Query: 689 FRK 697
+RK
Sbjct: 295 YRK 297
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 31.5 bits (68), Expect = 0.61
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 367 DIFLVAVKKPWVRCPP 320
+ F +A +KPWVRCPP
Sbjct: 477 NFFTIAYEKPWVRCPP 492
>AF101316-2|AAC69230.1| 692|Caenorhabditis elegans Hypothetical
protein F52F10.4 protein.
Length = 692
Score = 31.5 bits (68), Expect = 0.61
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 382 NIDVADIFLVAVKKPWVRCPP 320
N D F +A KPW+RCPP
Sbjct: 461 NGDQTKFFNIAYSKPWIRCPP 481
>U88184-7|AAK31516.1| 576|Caenorhabditis elegans Hypothetical
protein F36H5.5 protein.
Length = 576
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 181 RSLEAYRLKSEEWGVNVQPYSGSPATLPFIP 273
R E Y++ +E G+++Q G+ ATL F P
Sbjct: 291 REFELYQMDTEFGGIDIQMAGGAKATLVFCP 321
>AF101316-1|AAC69231.1| 684|Caenorhabditis elegans Hypothetical
protein F52F10.3 protein.
Length = 684
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -2
Query: 382 NIDVADIFLVAVKKPWVRCPP 320
N D F + KPW+RCPP
Sbjct: 455 NGDHRYFFGIGYSKPWIRCPP 475
>AF016450-6|AAB65982.1| 311|Caenorhabditis elegans Serpentine
receptor, class t protein67 protein.
Length = 311
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 485 WHELLLKM---LDYKRFREIADANGAYLMADMAH 577
WH ++ M +D +FR IA ANG +++ H
Sbjct: 240 WHPVIFTMVSFIDMTKFRNIAIANGFWILHSYCH 273
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,184,929
Number of Sequences: 27780
Number of extensions: 372983
Number of successful extensions: 820
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -