Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1831
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    30   0.44 
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    29   0.77 
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    27   4.1  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   4.1  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   5.4  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   9.5  
SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.5  

>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/45 (35%), Positives = 28/45 (62%)
 Frame = +1

Query: 214 RTHEKPYHSLFVDMMPYAQNSNILSSLLPVKHLADQVGKLSSIGG 348
           R H+ P+H L+  + P AQ++   +S LPV   ++   +L++IGG
Sbjct: 43  RKHD-PFHKLWDRLQPKAQSTIQRTSSLPVPSSSNFKERLNNIGG 86


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
 Frame = +1

Query: 229 PYHSLFVDMMPYAQNSNILSSLLPVKHLADQVGKLSSIGGSGPGFTHQQNVMINIQAYPG 408
           P ++  V  +P +    + S  L             S+  SGP +  +Q V  N+ +Y G
Sbjct: 285 PSYTTLVSQLPPSPCLTVSSGPLSTASSIPSNCSCPSVKSSGPSYHAEQEV--NVNSYNG 342

Query: 409 GNGVMG-----QAPPLYNYSSGQTMGSPFSQTSSN 498
           G          Q     +Y+SG+TM +  +QT+++
Sbjct: 343 GIPSTSYNDTPQQSVTGSYNSGETMSTYLNQTNTS 377


>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 152 CDVCNTRFTDISLLDNHKRLTGHTRSLITPSSST 253
           C+VC   F  I++ + HK+   H +++    SS+
Sbjct: 245 CEVCQKFFGKITVFEAHKKSKAHNKAVKRMQSSS 278


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 427 QAPPLYNYSSGQTMGSPFSQTSSNMYSGP 513
           Q PP YNY S   + S  SQ+++++ +GP
Sbjct: 17  QWPP-YNYKSDPLVNSKLSQSTTSVNAGP 44


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 152 CDVCNTRFTDISLLDNHKRLTGHTRSL 232
           C VCN  F   + L+NH+    H ++L
Sbjct: 272 CMVCNKNFRSQNQLENHENSKKHKKNL 298


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +2

Query: 308 IWPIKSENCQV*EAAVPGSRISK 376
           ++P+  ENC + EAA+ GS + K
Sbjct: 304 LFPLVQENCTLREAAIIGSILQK 326


>SPAC922.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
 Frame = +1

Query: 394 QAYPGGNGVM----GQAPPLYNYSSGQTMGSPFSQTSSN 498
           QAYP  N +     G    +Y YSS    G P  QT S+
Sbjct: 60  QAYPNINSINALTDGAVCTVYVYSSNNCTGEPVFQTDSD 98


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 210 NLLWLSSSDISVNLVLQTSQVCWGPSVSSETYSLASDKERFSFFA 76
           N + + S  I+ N+++Q  Q      V SET  +   K+ F+F A
Sbjct: 117 NAILMESDFINQNILVQVCQPVRHGVVDSETKFVIERKDSFTFLA 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,541,414
Number of Sequences: 5004
Number of extensions: 76935
Number of successful extensions: 194
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)