Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1831
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0284 + 32836171-32836377,32836466-32836568,32836681-328367... 30 2.5
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33... 29 4.3
12_02_0476 + 19493278-19493349,19493595-19494209,19494352-194945... 29 5.7
10_08_1001 + 22149921-22150068,22150613-22150890,22150979-22151533 29 5.7
02_02_0326 - 8976913-8976963,8977453-8977521,8978247-8978438,897... 29 5.7
09_04_0155 - 15185985-15186755,15187049-15187236,15187479-151875... 28 7.5
08_02_0100 + 12350498-12350538,12351216-12351717 28 7.5
03_02_0326 + 7474352-7474448,7474913-7474977,7475105-7475191,747... 28 7.5
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 28 9.9
>03_06_0284 +
32836171-32836377,32836466-32836568,32836681-32836757,
32836846-32837037,32837144-32837263,32837350-32837412,
32837537-32837671,32837827-32837991,32838104-32838181,
32840303-32840389,32840548-32840619,32840925-32840951,
32842292-32842390,32843143-32843213,32843710-32843838,
32843936-32844012,32844186-32844226,32844319-32844393,
32844525-32844673,32844766-32844870,32844948-32845023,
32845465-32845541,32845761-32846529
Length = 997
Score = 29.9 bits (64), Expect = 2.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 358 GFTHQQNVMINIQAYPGGNGVMGQAPP 438
GF HQ+ V I +Q P NG+ PP
Sbjct: 910 GFPHQRPVQIGLQHQPAVNGIQPPLPP 936
>07_01_0042 -
334417-334431,334563-334688,334852-335136,335220-335368,
336239-336536,337030-337131,337245-337613,337973-338115,
338334-338518,339246-339475,339734-339821,340158-340253,
340397-340512,340604-340852,340950-341175,341411-341622
Length = 962
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 301 VKHLADQVGKLSSI-----GGSGPGFTHQQNVMINIQAYPGGNGVMGQAPPLYNYSSGQT 465
++H A+Q+ +S+ G G F H +V N + + G A P ++ SSG
Sbjct: 581 MRHSANQIDNPTSVQHLLVNGCGGAFLHPTHVFKNFEQFSGATYECKAAYPSFDDSSGIA 640
Query: 466 MGS 474
+G+
Sbjct: 641 LGN 643
>12_02_0476 +
19493278-19493349,19493595-19494209,19494352-19494519,
19494677-19494868,19495604-19495672,19496461-19496544
Length = 399
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 208 IDRTHEKPYHSLFVDMMPYAQNSNILSSLLPVKHLADQV 324
++ T +KP + F++ MP+ N + L+P + D+V
Sbjct: 247 VEMTRDKPVNVRFIEFMPFDGNVWNVKKLVPYAEIMDKV 285
>10_08_1001 + 22149921-22150068,22150613-22150890,22150979-22151533
Length = 326
Score = 28.7 bits (61), Expect = 5.7
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Frame = +1
Query: 160 LQHQVHGYIAA*QPQKIDRTHEKPYHSLFVDMMPYAQNSNILSSLLPVKHLADQVGKLSS 339
L H V +I A ++ + HE H P A+ ++S + L +LSS
Sbjct: 134 LAHGVSNFIGAYALCRVIKRHEAGLHG----EPPAAKAKGMISKVSSSSSLVTVEHQLSS 189
Query: 340 IGGSGPGFTHQQN--VMINIQAYPGGNGVMGQ-APPLYNYSSGQTMG 471
G + P FT N +++ GG G Q P Y G G
Sbjct: 190 RGNASPSFTPTNNGSPLVDEMFVGGGGGDPFQLLPSCVPYHGGDACG 236
>02_02_0326 -
8976913-8976963,8977453-8977521,8978247-8978438,
8978597-8978764,8978902-8979513,8979765-8979815
Length = 380
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Frame = +1
Query: 208 IDRTHEKPYHSLFVDMMPYAQNSNILSSLLPVKHLADQV 324
++ T +KP + F++ MP+ N + L+P + D+V
Sbjct: 239 VEMTRDKPVNVRFIEFMPFDGNVWNVKKLVPYAEMMDKV 277
>09_04_0155 -
15185985-15186755,15187049-15187236,15187479-15187517,
15187741-15187768
Length = 341
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 152 CDVCNTRFTDISLLDNHKRLTGHTRSLITPSS 247
C VC +FT S L +H ++ H +L PSS
Sbjct: 220 CRVCQAKFTCQSDLQSHLKVMKHQLNLRAPSS 251
>08_02_0100 + 12350498-12350538,12351216-12351717
Length = 180
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 134 LGPQHTCDVCNTRFTDISLLDNHKRLTGHTRSLITPSSS 250
+G + C VC F+ L HK T H L TP +S
Sbjct: 118 VGAEFKCSVCGRSFSSYQALGGHK--TSHRFKLPTPPAS 154
>03_02_0326 +
7474352-7474448,7474913-7474977,7475105-7475191,
7475393-7475440,7476086-7476142,7476588-7476687,
7476875-7477185,7477298-7477667,7478745-7478876,
7479362-7479575,7479650-7479710,7480098-7480292
Length = 578
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = +2
Query: 533 PIP--WSEHLHGSAGLRTIPHFDAEFDVSGYKDRKF 634
P+P W+EHLH ++GL I + EF+ K RK+
Sbjct: 138 PVPTLWTEHLHANSGLGYISKLE-EFENFVEKIRKY 172
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +1
Query: 400 YPGGNGVMGQAPPLYNYSSGQTMGS-PFSQTSSNMYSGPGRSRCP 531
Y GG G G P Y SG G+ P SQ Y P S P
Sbjct: 55 YYGGGGGYGAPPSTQPYGSGGGYGAPPSSQPYGAPYGAPPPSSAP 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,929,416
Number of Sequences: 37544
Number of extensions: 555323
Number of successful extensions: 1466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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