Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1831
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 34 0.14
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 34 0.14
Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical pr... 33 0.24
Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical pr... 32 0.55
U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical pr... 32 0.55
U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical p... 29 2.9
Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical p... 29 2.9
Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical p... 29 2.9
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 29 3.9
AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical... 29 3.9
Z79695-7|CAO79774.1| 291|Caenorhabditis elegans Hypothetical pr... 29 5.1
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 29 5.1
AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical... 29 5.1
Z93372-3|CAB07545.1| 601|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical pr... 28 8.9
AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical... 28 8.9
AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical ... 28 8.9
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 747 EDPFDLVYSLNQTIDRKQPVACFEVARP*NIGKMQQNMNFLSLYPDTSNSASK 589
+D DL+Y + Q + + P C E+ RP + + QQ N L+ + D ++ K
Sbjct: 1543 DDCLDLMYEIEQMNEARLPQVCHEMRRP--LAEKQQKQNTLNAFNDILSAKEK 1593
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -2
Query: 747 EDPFDLVYSLNQTIDRKQPVACFEVARP*NIGKMQQNMNFLSLYPDTSNSASK 589
+D DL+Y + Q + + P C E+ RP + + QQ N L+ + D ++ K
Sbjct: 1543 DDCLDLMYEIEQMNEARLPQVCHEMRRP--LAEKQQKQNTLNAFNDILSAKEK 1593
>Z75540-6|CAN86598.1| 584|Caenorhabditis elegans Hypothetical
protein F37D6.2c protein.
Length = 584
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 56 QSLIANSAKKENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRLTGHT 223
+ L N + +++ + E ++ LGPQ C VC FT LL+ H R HT
Sbjct: 341 EDLRPNVRRSKHIFVREFVNHMRSHALGPQMRCHVCALTFTSRLLLEAH-RTNDHT 395
>Z75540-3|CAD01084.1| 581|Caenorhabditis elegans Hypothetical
protein F37D6.2b protein.
Length = 581
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 56 QSLIANSAKKENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRLTGHT 223
+ L N + +++ + E ++ LGPQ C VC FT LL+ H R HT
Sbjct: 338 EDLRPNVRRSKHIFVREFVNHMRSHALGPQMRCHVCALTFTSRLLLEAH-RTNDHT 392
>Z75540-2|CAA99848.1| 582|Caenorhabditis elegans Hypothetical
protein F37D6.2a protein.
Length = 582
Score = 33.1 bits (72), Expect = 0.24
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +2
Query: 56 QSLIANSAKKENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRLTGHT 223
+ L N + +++ + E ++ LGPQ C VC FT LL+ H R HT
Sbjct: 339 EDLRPNVRRSKHIFVREFVNHMRSHALGPQMRCHVCALTFTSRLLLEAH-RTNDHT 393
>Z78418-2|CAB01695.1| 817|Caenorhabditis elegans Hypothetical
protein F25D7.3 protein.
Length = 817
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 95 SLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRLTGHTR 226
S S ++ L +TCDVC+ +FT L HKRL + R
Sbjct: 575 STSNLKTHLRLHNGQKPYTCDVCDAKFTQYVHLRLHKRLHANER 618
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 83 KENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRL 211
KE L+ ++ + T H CD+C+ RF+ S L H RL
Sbjct: 543 KEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHLRL 585
>U41020-1|AAA82331.2| 470|Caenorhabditis elegans Hypothetical
protein T27B1.2 protein.
Length = 470
Score = 31.9 bits (69), Expect = 0.55
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 95 SLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRLTGHTRSLI 235
S E E+ + T CD CN RF S L NHKR+ + +
Sbjct: 95 SKMELEEHQNSHTGQKPFECDTCNARFNRRSTLWNHKRIHSDAKPFV 141
>U23454-9|AAC46522.2| 249|Caenorhabditis elegans Hypothetical
protein C10A4.8 protein.
Length = 249
Score = 31.1 bits (67), Expect = 0.96
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Frame = +2
Query: 20 MNILDNTADEI---FQSLIANSAKKENLSLSEASEYVSLDTLG--PQHTCDVCNTRFTDI 184
MN+L N + F ++ N A + ++ + YV G ++ CDVC+ F+
Sbjct: 121 MNVLQNLGHTLPLPFVPMLKNVAPAQKRLNNKRASYVDHSQKGNLKKYRCDVCDKTFSRS 180
Query: 185 SLLDNHKRL 211
+ L HKR+
Sbjct: 181 NTLITHKRI 189
>Z73896-8|CAA98061.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 8 HLNSMNILDNTADEIFQSLIANSAKKENLSLSEASEYVSLDTL 136
HL+ N + D+ Q +I N +K E LSL + EY+++++L
Sbjct: 371 HLSLKNNKEGVRDDSLQLIIKNCSKLEELSL-DCCEYLTVNSL 412
>Z73422-12|CAJ76980.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.9 protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 8 HLNSMNILDNTADEIFQSLIANSAKKENLSLSEASEYVSLDTL 136
HL+ N + D+ Q +I N +K E LSL + EY+++++L
Sbjct: 371 HLSLKNNKEGVRDDSLQLIIKNCSKLEELSL-DCCEYLTVNSL 412
>Z73422-11|CAA97768.1| 423|Caenorhabditis elegans Hypothetical
protein B0564.6b protein.
Length = 423
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 8 HLNSMNILDNTADEIFQSLIANSAKKENLSLSEASEYVSLDTL 136
HL+ N + D+ Q +I N +K E LSL + EY+++++L
Sbjct: 269 HLSLKNNKEGVRDDSLQLIIKNCSKLEELSL-DCCEYLTVNSL 310
>Z73422-10|CAA97772.1| 525|Caenorhabditis elegans Hypothetical
protein B0564.6a protein.
Length = 525
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +2
Query: 8 HLNSMNILDNTADEIFQSLIANSAKKENLSLSEASEYVSLDTL 136
HL+ N + D+ Q +I N +K E LSL + EY+++++L
Sbjct: 371 HLSLKNNKEGVRDDSLQLIIKNCSKLEELSL-DCCEYLTVNSL 412
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 433 PPLYNYSSGQTMGSPFSQTSSNM 501
PP +N+++G SPF+ T +NM
Sbjct: 469 PPYHNFTTGSATVSPFASTPANM 491
>AC025726-29|AAK73931.2| 1098|Caenorhabditis elegans Hypothetical
protein Y71G12B.5 protein.
Length = 1098
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = -2
Query: 225 LVCPVNLLWLSSSDISVNLVLQTSQVCWGPSVS----SETYSLASDKERFSFFAELAIKL 58
++C V + S SDI + L L Q+ G +S S T+ ASD +F ++ L
Sbjct: 320 IICTVTGISKSPSDIELTLSLLDQQLAAGTILSCPKRSFTFDQASDVIISAFLDKMTYTL 379
Query: 57 *NISSAVLSKMFME 16
SSA + +F E
Sbjct: 380 ATKSSAKIGDLFAE 393
>Z79695-7|CAO79774.1| 291|Caenorhabditis elegans Hypothetical
protein F27D4.2b protein.
Length = 291
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +1
Query: 403 PGGNGVMGQAPPLYNYSSGQTMGSPFSQTSSNMYSGPGRSRCPANTLVRTLTWVSRATDN 582
PG G+ G PP ++ Q + + +S S P R+ + RT T ++ + N
Sbjct: 186 PGMAGLPGMMPPNNMAAAMQHFNAQMAAAASVAVSTPSRNPSTSGAASRTRTPLTTSATN 245
Query: 583 SP 588
SP
Sbjct: 246 SP 247
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -3
Query: 224 SCVLSIFCGCQAAIYP*TWCCRHRKCVGVQVCPAKR 117
SCVL+ ++ YP T+C +C G +C KR
Sbjct: 1935 SCVLNDRYNVRSRSYPKTFCTFDSECTGGSICIDKR 1970
>AC024826-17|AAF60789.1| 662|Caenorhabditis elegans Hypothetical
protein Y55F3AM.14 protein.
Length = 662
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 143 QHTCDVCNTRFTDISLLDNHKR 208
+H C VC F+ S+L++HKR
Sbjct: 103 RHICTVCGKGFSYFSILESHKR 124
>Z93372-3|CAB07545.1| 601|Caenorhabditis elegans Hypothetical
protein BE10.3 protein.
Length = 601
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 322 VGKLSSIGGSGPGFTHQQNVMINIQAYPGGNGVMGQAPPLYNYSSGQTMGSP-FSQTSSN 498
+GK + S P +N I ++ YP + ++ + P++NY +T P + +
Sbjct: 385 IGKFMRMIESSPSSPTIRNSKITVKLYPMSSQLISRTAPVFNY---RTQNVPEILNSGAR 441
Query: 499 MYSGP 513
+ SGP
Sbjct: 442 LVSGP 446
>Z81556-2|CAB04525.2| 445|Caenorhabditis elegans Hypothetical
protein F58G1.2 protein.
Length = 445
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 152 CDVCNTRFTDISLLDNHKRLTGHTRSLI 235
C VC RF ++SLL+ H R H ++ I
Sbjct: 114 CKVCKNRFGEMSLLERHLR-DSHPKAYI 140
>AL132904-23|CAC35839.2| 312|Caenorhabditis elegans Hypothetical
protein Y111B2A.10b protein.
Length = 312
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 107 ASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHK 205
A Y+S ++ + C C RFT ++ L HK
Sbjct: 226 AVRYISAESPKHPYACIECGKRFTTVTALSTHK 258
>AL132904-7|CAC35838.1| 430|Caenorhabditis elegans Hypothetical
protein Y111B2A.10a protein.
Length = 430
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 107 ASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHK 205
A Y+S ++ + C C RFT ++ L HK
Sbjct: 344 AVRYISAESPKHPYACIECGKRFTTVTALSTHK 376
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,953,542
Number of Sequences: 27780
Number of extensions: 465768
Number of successful extensions: 1324
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1323
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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