Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1831
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.20 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.62 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   1.1  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   3.3  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   3.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   5.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.6  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 390 INHNVLLMREPGTAASYT*QFSDLIGQMFH 301
           I   VL   E GT+  Y  + S+L+G  FH
Sbjct: 468 IKATVLFATETGTSQMYAEKLSELLGHAFH 497


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 258 HHVDEEGVIRLLVCPVNLLWLSSSDISVNLVLQTSQVCWGPSV 130
           H VD   +++L+    +L W SS   S+N +   S   W P +
Sbjct: 78  HTVDFHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDI 120


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +2

Query: 83  KENLSLSEASEYVSLDTLGPQHTCDVCNTRFTDISLLDNHKRL-TGHTRSLITPSSST 253
           KENLS+        + T    + CDVC   F     L  H R+ TG      T  S T
Sbjct: 132 KENLSVHRR-----IHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKT 184


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 692 GCLRSIVWFNEYTR 733
           GCLRSI+ FN   R
Sbjct: 334 GCLRSIILFNPEVR 347


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 692 GCLRSIVWFNEYTR 733
           GCLRSI+ FN   R
Sbjct: 334 GCLRSIILFNPEVR 347


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 146 HTCDVCNTRFTDISLLDNHKRL 211
           + C+ CN R+   + L  HK L
Sbjct: 36  YVCEFCNRRYRTKNSLTTHKSL 57


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +2

Query: 152 CDVCNTRFTDISLLDNHKRL 211
           C++C   ++ ++ L NHK +
Sbjct: 35  CNICKRVYSSLNSLRNHKSI 54


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +2

Query: 137 GPQHTCDVCNTRFTDISLLDNHK 205
           G  +TCDVC    +    L  HK
Sbjct: 369 GVCYTCDVCGKTLSTKLTLKRHK 391


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,338
Number of Sequences: 438
Number of extensions: 5895
Number of successful extensions: 35
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)