Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1829
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    33   0.044
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    29   0.95 
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    26   5.0  

>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = +1

Query: 58  VLVLYEFFRKNSNTNSLRITNIFTYMRY*LAATQRFSID*KQ*CQLLGSAHQFNKSQMSA 237
           ++ LY FF    +T  ++   +   M      TQ+      Q  QL G AH+FN+   + 
Sbjct: 46  LIYLYSFFSSGVHTRGIQFYRVSAVMELLQQWTQQAKAALTQARQLCGDAHKFNEDAKTD 105

Query: 238 LHNQLQ 255
           L N ++
Sbjct: 106 LRNSIK 111


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 436 NCSELHIKRSV*CLLSILNLSFVGIENFHFFLHSGS 329
           NC+ +H+KR+    L  +N SF+  E  ++    GS
Sbjct: 308 NCTRVHLKRTSPSELDYINASFIKTETSNYIACQGS 343


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 261 MILHLIA*CVQKSKIHYIIMSNSL--PLCKKKWKFSIPTKLKFKIDNRH 401
           + L+ I+   +   +H +++   +  P  K+ W+F+    L F ++N H
Sbjct: 24  IFLNKISALPESENVHCLLLKQLIGSPQLKQTWQFNFCVDLNFLLENMH 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,951
Number of Sequences: 5004
Number of extensions: 53001
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)