Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1828
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1677 + 35306232-35306328,35306697-35307248,35307324-353076...    30   1.8  
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059...    29   4.2  
02_01_0403 - 2938242-2941334                                           29   5.6  
02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963           28   9.7  

>04_04_1677 +
           35306232-35306328,35306697-35307248,35307324-35307608,
           35308035-35308296,35308378-35308430,35308520-35308587,
           35310331-35310420,35310502-35310586,35310822-35311254,
           35312872-35313439,35313527-35314000
          Length = 988

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 476 LTNIDRATTNTRIKAIYYKTESFSSSHVTNNQKTMPNLKLIL 351
           L   D ATTN+ +K  Y  T +F   HVT +  T+   +L L
Sbjct: 848 LVPTDMATTNSTVKLTYRNTGTFFGIHVTADPFTLSYSQLTL 889


>03_05_1024 +
           29802831-29804208,29804710-29804759,29805569-29805954,
           29807753-29807813,29807921-29807941
          Length = 631

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 469 TSIEQQRIRALKQSITKPRAFHH 401
           T  E  R+RA+ QS+ + RAFHH
Sbjct: 549 TKGETPRLRAIDQSLRQQRAFHH 571


>02_01_0403 - 2938242-2941334
          Length = 1030

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = -1

Query: 446 TRIKAIYYKTESFSSSHVTNNQKTMPNLK---LILKKLSFELKKIIF--RNKTTLKLSIY 282
           T +  I  K+ SFS      N  T+PNLK   ++    S  + + I+  RN T L+LS Y
Sbjct: 307 TNLVTIDLKSNSFSGKLTNVNFSTLPNLKTLDVVWNNFSGTVPESIYSCRNLTALRLS-Y 365

Query: 281 N 279
           N
Sbjct: 366 N 366


>02_01_0430 - 3136181-3136248,3136544-3136923,3137545-3137963
          Length = 288

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = -1

Query: 446 TRIKAIYYKTESFSSSHVTNNQKTMPNLKLI---LKKLSFELKKIIFR--NKTTLKLS 288
           T +K I  K  +F+      N   +PNLKL+     K + E+   I+R  N TTL+LS
Sbjct: 61  TSLKIINLKHNNFTGELSKVNFSRLPNLKLLDLMSNKFTGEILDSIYRCSNLTTLQLS 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,803,752
Number of Sequences: 37544
Number of extensions: 293061
Number of successful extensions: 471
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)