Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1828
         (788 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY865040-1|AAW79432.1|  597|Drosophila melanogaster SR-CII protein.    30   4.1  
BT025925-1|ABG02169.1|  287|Drosophila melanogaster IP12320p pro...    29   7.2  
BT022669-1|AAY55085.1|  205|Drosophila melanogaster IP07109p pro...    29   7.2  
AY865039-1|AAW79431.1|  599|Drosophila melanogaster SR-CII protein.    29   7.2  
AY865036-1|AAW79428.1|  599|Drosophila melanogaster SR-CII protein.    29   7.2  
AY865027-1|AAW79419.1|  599|Drosophila melanogaster SR-CII protein.    29   7.2  
AY865026-1|AAW79418.1|  599|Drosophila melanogaster SR-CII protein.    29   7.2  
AY865022-1|AAW79414.1|  599|Drosophila melanogaster SR-CII protein.    29   7.2  
AF216642-1|AAF19660.1|  599|Drosophila melanogaster scavenger re...    29   7.2  
AE014297-1312|AAF54652.1|  205|Drosophila melanogaster CG14708-P...    29   7.2  
AE013599-3238|AAF46741.2|  445|Drosophila melanogaster CG15674-P...    29   7.2  

>AY865040-1|AAW79432.1|  597|Drosophila melanogaster SR-CII protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   I  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTIPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>BT025925-1|ABG02169.1|  287|Drosophila melanogaster IP12320p
           protein.
          Length = 287

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 612 GGSLVYNIYTYQNPFINQ*KYGKLMKILIKSSSCYKYIEQLRASVSDEHRSS 457
           G S++ N    + P      Y  + KIL+  SS Y++ +  R  +  EHRSS
Sbjct: 4   GDSVLRNPSGERKPIYGSLNYDFVEKILVNMSSVYQHRKLSRLPLLFEHRSS 55


>BT022669-1|AAY55085.1|  205|Drosophila melanogaster IP07109p
           protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -1

Query: 398 HVTNNQKTMPNLKLILKKLSFELKKIIFRNKTTLKLSI-YNVISAILFLNPQKFIFY*EE 222
           ++TN + T P L  ++K +S+E++     N+   ++ + Y+    ++ L P + +F   +
Sbjct: 105 YLTNKKYTFPMLNHLIKLMSWEVEPETIFNEKAFQIDVNYHEDEEVMQLEPNERLFRRLK 164

Query: 221 FIYE 210
            IY+
Sbjct: 165 SIYD 168


>AY865039-1|AAW79431.1|  599|Drosophila melanogaster SR-CII protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   +  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTLPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>AY865036-1|AAW79428.1|  599|Drosophila melanogaster SR-CII protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   +  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTLPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>AY865027-1|AAW79419.1|  599|Drosophila melanogaster SR-CII protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   +  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTLPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>AY865026-1|AAW79418.1|  599|Drosophila melanogaster SR-CII protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   +  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTLPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>AY865022-1|AAW79414.1|  599|Drosophila melanogaster SR-CII protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   +  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTLPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>AF216642-1|AAF19660.1|  599|Drosophila melanogaster scavenger
           receptor-like proteinprecursor protein.
          Length = 599

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
 Frame = -1

Query: 473 TNIDRATTNTRIKAIYYK-TESFSSSHVTNNQKTMPNLKLILKKL------SFELKKIIF 315
           T+I R TT  ++ +I  + + SF++   + N  T P  ++  KKL      S E   +  
Sbjct: 405 TSISRNTTTEKVFSISLEASRSFTTPRTSTNSTTFPRTQISTKKLLNTHETSTETSTLPT 464

Query: 314 RNKTTLKLSIYN 279
           RNK   + SI++
Sbjct: 465 RNKKLSQPSIFS 476


>AE014297-1312|AAF54652.1|  205|Drosophila melanogaster CG14708-PA
           protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -1

Query: 398 HVTNNQKTMPNLKLILKKLSFELKKIIFRNKTTLKLSI-YNVISAILFLNPQKFIFY*EE 222
           ++TN + T P L  ++K +S+E++     N+   ++ + Y+    ++ L P + +F   +
Sbjct: 105 YLTNKKYTFPMLNHLIKLMSWEVEPETIFNEKAFQIDVNYHEDEEVMQLEPNERLFRRLK 164

Query: 221 FIYE 210
            IY+
Sbjct: 165 SIYD 168


>AE013599-3238|AAF46741.2|  445|Drosophila melanogaster CG15674-PA
           protein.
          Length = 445

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = -3

Query: 612 GGSLVYNIYTYQNPFINQ*KYGKLMKILIKSSSCYKYIEQLRASVSDEHRSS 457
           G S++ N    + P      Y  + KIL+  SS Y++ +  R  +  EHRSS
Sbjct: 218 GDSVLRNPSGERKPIYGSLNYDFVEKILVNMSSVYQHRKLSRLPLLFEHRSS 269


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,468,072
Number of Sequences: 53049
Number of extensions: 529442
Number of successful extensions: 1206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)