Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1828
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical pr...    30   2.2  
Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical pr...    28   6.6  

>AF016668-2|AAO12442.1|  140|Caenorhabditis elegans Hypothetical
           protein F36H9.8 protein.
          Length = 140

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +1

Query: 28  RCFGESSNNNLLFSVYRFTLFRLVPYRR*CSLPLPSIICNPPKFNQNKLQVIFRS 192
           RC   +    +LFSV  F++F L  ++          ICN  K  +N L  +FRS
Sbjct: 44  RCL-RTREKQILFSVRNFSIFLLFFFKNDHRFDFNFSICNKKKELENLLAALFRS 97


>Z37140-2|CAA85502.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK899.2 protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +2

Query: 44  LPTIICCLVFTDSHFFDLSPIEDSALYLCHPLFAILQNLIKTNFKSFLGVYFFFII 211
           LP  I C+VF     F L  I+ + LY  HPL  I +   +    +FL +Y   +I
Sbjct: 228 LPREILCIVFAGMGAFWLGTIQFALLY--HPLHDIFKVHSEYTTIAFLSIYALIVI 281


>Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 16  FLH*RCFGESSNNNLLFSVYRFTLFRLVPYRR*CSLPLPSIIC-NPP 153
           FL   CFG   +  + F     TLF+L+ Y +   +P+PS    NPP
Sbjct: 152 FLAMSCFGACRSGFIKFICLPITLFKLIFYNQKGYIPIPSSDPENPP 198


>AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 16  FLH*RCFGESSNNNLLFSVYRFTLFRLVPYRR*CSLPLPSIIC-NPP 153
           FL   CFG   +  + F     TLF+L+ Y +   +P+PS    NPP
Sbjct: 152 FLAMSCFGACRSGFIKFICLPITLFKLIFYNQKGYIPIPSSDPENPP 198


>Z95310-3|CAB08562.3| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 428 YYKTESFSSSHVTNNQKTMPNLKLILKKLSFE-LKK 324
           ++ TE   S    NNQ  + NLK  +K+L FE LKK
Sbjct: 816 FHITEKQFSIKAANNQLEIENLKKTIKELKFETLKK 851


>Z92790-6|CAH60783.2| 1026|Caenorhabditis elegans Hypothetical
           protein H40L08.3 protein.
          Length = 1026

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 428 YYKTESFSSSHVTNNQKTMPNLKLILKKLSFE-LKK 324
           ++ TE   S    NNQ  + NLK  +K+L FE LKK
Sbjct: 816 FHITEKQFSIKAANNQLEIENLKKTIKELKFETLKK 851


>Z34533-5|CAA84298.1|  781|Caenorhabditis elegans Hypothetical
           protein B0285.7 protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -1

Query: 407 SSSHVTNNQKTMPNLKLILKKLSFELKKIIFRNKTTLKLSIYNVISAILFLNPQKFIFY 231
           S+S ++  +KT+P +   L  ++FE    +F N TT+  +    I  I  LN + F  Y
Sbjct: 343 STSGISCFEKTVPLIAQQLSFVAFEKTNPLFYNTTTMDGAYLPEIDMIFNLNAKNFKQY 401


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,717,674
Number of Sequences: 27780
Number of extensions: 302642
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)