Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1828
         (788 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    30   0.021
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    23   2.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   5.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   7.5  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    22   7.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 30.3 bits (65), Expect = 0.021
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 446 TRIKAIYYKTESFSSSHVTNNQKTM 372
           T+++ + YKTE+F S H  N +KT+
Sbjct: 15  TKLRNLIYKTEAFDSLHAGNAEKTL 39


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 423 VIDCFNARIRCCSIDVRQK 479
           V+DC  A I C   D+++K
Sbjct: 360 VLDCHTAHIACKFADIKEK 378


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -2

Query: 37 QNSASVENGNDY 2
          QNSAS+EN N++
Sbjct: 16 QNSASLENDNEF 27


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 423 VIDCFNARIRCCSIDVRQK 479
           V+DC  A I C   ++++K
Sbjct: 360 VLDCHTAHIACKFAEIKEK 378


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +3

Query: 423 VIDCFNARIRCCSIDVRQK 479
           V+DC  A I C   ++++K
Sbjct: 71  VLDCHTAHIACKFAEIKEK 89


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 537 KILIKSSSCYKYIEQLRASVSDEHRSSNNEYAH 439
           +I ++ S       +L  S S +H S N++Y+H
Sbjct: 203 RIKLEQSPLCPPAPRLTNSNSIKHESDNSDYSH 235


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,489
Number of Sequences: 438
Number of extensions: 4131
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)