Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1827
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    28   1.4  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.8  
SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit L3...    26   7.2  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    26   7.2  
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.6  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   9.6  

>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 456  NEHEGGQARTLQTRARANKAELEAEFKSDDKELCHAATKIQASFRG 593
            NE+ G     +   +  N+  +E  F   +++ C AA   QASF G
Sbjct: 1722 NENVGVDVELVSAISIDNETFIERNFTDTERKYCFAAPNPQASFAG 1767


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 447 KEINEHEGGQARTLQTRARANKAELEAEFKSDDKELCHAATKIQASFRGHQAR 605
           ++ N+    +A  L+  ARA KA  +AE  S+      ++ +  AS R  QAR
Sbjct: 130 RQYNDRSTSEA--LELEARAKKAAQDAELASERAREAQSSIERSASLREKQAR 180


>SPBC1604.13c |mrpl32||mitochondrial ribosomal protein subunit
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 133 SILSRVPQSQIQHVITRKRLICNRVSRNKTLN 228
           SIL  VP+ +  +   R RL+  +  ++KT+N
Sbjct: 44  SILLAVPKKKTSYTKKRSRLLSGKALKDKTVN 75


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -1

Query: 157 IEVLEIEWIGALKIQSQFHTHTHRLQAQKIQFFFVGIRGNR---PNLQVCS 14
           IEVLE  W   +  + +    T  + + KIQ FF     +    PN Q C+
Sbjct: 31  IEVLEDGWCDGICSEKRGWFPTSCIDSSKIQNFFSSFHSSNEKDPNAQCCA 81


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +2

Query: 92  CVCVKLRLDFQSSDPFYLEYLNRKYNML*R--ENDSFVIECH 211
           C  +K ++ F ++D FY +YL   +  L +        +ECH
Sbjct: 25  CSILKYKVYFVTTDTFYCKYLTASFTGLKKFPTERQLPLECH 66


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 441 QDKEINEHEGGQARTLQTRARANK-AELEAEFKSDDKEL 554
           +D+E  +  GG  R      R N+  ++EAE   D++EL
Sbjct: 122 EDEEDEDESGGGRRKRARHDRRNQFLDIEAEVDEDEEEL 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,720
Number of Sequences: 5004
Number of extensions: 51053
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)